PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G291000.1.p
Common NamePRUPE_ppa026277mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 894aa    MW: 101824 Da    PI: 5.2841
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G291000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1812.1e-2577161388
                FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                         Yn+YA+ vGF+vrk+  ++sk +g++++r+f+Cskeg+r+++k++ ++ +++r+etrtgC a++ ++++ dgk++vt++e++HnH 
  Prupe.2G291000.1.p  77 YNKYARLVGFNVRKDWVNRSKVHGQVVSRKFTCSKEGYRRKDKRD-VNVKKHRKETRTGCLAHMIITRQPDGKYRVTQFEEQHNHG 161
                         ******************************************999.999************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2277161IPR004330FAR1 DNA binding domain
PfamPF105519.6E-26302396IPR018289MULE transposase domain
PROSITE profilePS5096610.126582618IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-5593620IPR006564Zinc finger, PMZ-type
PfamPF044344.7E-4595616IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MEREDDDFGS LHEDSMDVGL QATNRLDLNV EQDSRSPKVV YVNGTQSNPP SIGADSKDSV  60
LEVGTEFESD EHAYKSYNKY ARLVGFNVRK DWVNRSKVHG QVVSRKFTCS KEGYRRKDKR  120
DVNVKKHRKE TRTGCLAHMI ITRQPDGKYR VTQFEEQHNH GNVNSSIAQA LPEQHNHDNV  180
NLSIAQALPE QRECTVPEAA DADSVKELGS LSKSALDSMN RGFRVRESVD SFALDFENYL  240
QSERTRDMKE GEVGRLLHYF QRQHFENPSF FYAIQVDTDD KVSNILWADD NMVSDYDHFG  300
DVVCLDTVCR ADKNCLPFVQ FVGVNNHKQV VIFSAALLYD DTVQSYKWLF QTFVESMSGK  360
KPKAILTDQD AAIVEAINSV LPETDHRICT WQMCQNALKH LNHIVKDTES FANDFKSCIY  420
DEKDEDGFVY AWGNMLDNYG LQQNDWLKWM FREREKWAVV YGRNTFFVDR KGSHLVESLF  480
HDLRNYLYSD LDVLDFVKYF ERLVDEQRYK EIEANDEMNR CMPRLMGNVI LLKHASDVYT  540
PRAFEVFQRG YEKCLNIVVN QCSENGPLFE YKTNIFGKSR EHTVTFNSSD DAVICSCKKF  600
DSVGFLCSHA LKVLDHMNIK VVPSKYILKR WTKNARLGSA RENDVSSIRD NPKLVVASRY  660
KNMCGRIIML SAKASASEEA FQFAVGQLDE VMEGVEKILT LKPQDAQAFT SSSTANASDS  720
ERAVVFPDGN AIEDQDDSVV KGAKEKETAV FDKGQLTNVN GEFSSTKRIQ NVDTSLQNTD  780
SCISSPSLYV SPEGTTANPI MQGLYNFEAN QVVQCMYQQD NLVLEEHSNP NMYQPLNFFS  840
NQHDSPGHSQ LLQEPLINGT YQEPVSSTPE LRQAMDLDVQ HPHSSSFLLL DRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G291000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007220961.20.0protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_020412604.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLA0A251QN440.0A0A251QN44_PRUPE; Uncharacterized protein
STRINGEMJ221600.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-102FAR1-related sequence 5