PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G290000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 135aa MW: 14839.9 Da PI: 8.4916 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.6 | 7.7e-37 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+C++dC++ pyfp ++p++fa vh+++Gasnv k+l++lp++ r +a+++l+yeAe+r++d vyG+v++i++l+q++++++ Prupe.2G290000.1.p 5 RCAACKYLRRRCPSDCIFFPYFPPNNPERFASVHRIYGASNVAKMLQQLPHHLRGEAADTLCYEAECRTQDCVYGCVKTISQLHQEINKAE 95 6****************************************************************************************** PP DUF260 92 aelallkee 100 +la++++e Prupe.2G290000.1.p 96 CQLAKTRAE 104 ****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.611 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.9E-38 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MISGRCAACK YLRRRCPSDC IFFPYFPPNN PERFASVHRI YGASNVAKML QQLPHHLRGE 60 AADTLCYEAE CRTQDCVYGC VKTISQLHQE INKAECQLAK TRAEIAFISS SGGQGRTTTT 120 STSTSLPITS STQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-34 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-34 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G290000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007219781.2 | 1e-96 | LOB domain-containing protein 24 | ||||
Swissprot | P59468 | 4e-48 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A251QN99 | 2e-95 | A0A251QN99_PRUPE; Uncharacterized protein | ||||
STRING | EMJ20980 | 3e-79 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 3e-49 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G290000.1.p |