PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.2G288000.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 383aa MW: 39726.1 Da PI: 6.8911

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.2G288000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.7	4.9e-35	85	155	3	73
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai ++tgt++ +a ++ Prupe.2G288000.1.p 85 AAKRSSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIMQATGTGTVPAIAV 155 5799***********************************************************77777433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-28	89	157	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.328	90	144	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MEPNQRQSLE ESNELEQHSN SSSNDNTTSA SDPSVADPPE KIFPLTAPTM KEELTDTVQE 60 LDEGSLPMGL IQVPVPTSSE KQVVAAKRSS KDRHTKVEGR GRRIRMPATC AARIFQLTRE 120 LGHKSDGETI RWLLEHAEPA IMQATGTGTV PAIAVSVGGT LKIPTTSPAR PNGEITEIPR 180 KRRKRGSNSE FVDVHEQSSV SSGLAPMSYG GGGGGSGGGA HGLVPMWQVG ATGAAGPFFM 240 FPNNGAMNTN QPQLWAVPAA DAATPIFNFQ ARPISNFLSA FQPGVHVVGG DVQLQASSGS 300 ISSGATSGSG GSCSSSLGPS LGSASGTRAN KNTISTGSGT GASAAAAGAT TTQMLRDFSL 360 EIYDKRELQF MGANSQTPYS KP*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MEPNQRQSLE ESNELEQHSN SSSNDNTTSA SDPSVADPPE KIFPLTAPTM KEELTDTVQE  60
LDEGSLPMGL IQVPVPTSSE KQVVAAKRSS KDRHTKVEGR GRRIRMPATC AARIFQLTRE  120
LGHKSDGETI RWLLEHAEPA IMQATGTGTV PAIAVSVGGT LKIPTTSPAR PNGEITEIPR  180
KRRKRGSNSE FVDVHEQSSV SSGLAPMSYG GGGGGSGGGA HGLVPMWQVG ATGAAGPFFM  240
FPNNGAMNTN QPQLWAVPAA DAATPIFNFQ ARPISNFLSA FQPGVHVVGG DVQLQASSGS  300
ISSGATSGSG GSCSSSLGPS LGSASGTRAN KNTISTGSGT GASAAAAGAT TTQMLRDFSL  360
EIYDKRELQF MGANSQTPYS KP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.2G288000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007218212.2	0.0	transcription factor TCP19
TrEMBL	A0A251QN09	0.0	A0A251QN09_PRUPE; Uncharacterized protein
STRING	XP_008234310.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	2e-62	TCP family protein

Link Out ? help Back to Top
Phytozome	Prupe.2G288000.1.p