PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G287500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 218aa MW: 24927.5 Da PI: 8.8106 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95 | 3.4e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCda+v+viifs++g+lye+ss Prupe.2G287500.1.p 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAQVSVIIFSQKGRLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 75.2 | 1.8e-25 | 80 | 171 | 8 | 98 |
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + e+ e+l++e++ + k+ienL+ +qR+llG +L+s+s++eLq++ qLe+s++kiR++K +l+ eq+e+l+ ke+ l een +L+++ Prupe.2G287500.1.p 80 KiEVEEYVEQLKHESTAMAKKIENLEASQRKLLGHGLDSCSVEELQEITGQLERSVRKIRERKAHLFAEQMEQLRAKERLLIEENAKLSEE 170 3356777899******************************************************************************998 PP K-box 98 l 98 + Prupe.2G287500.1.p 171 F 171 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.029 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.5E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.19E-33 | 3 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.61E-42 | 3 | 78 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.2E-25 | 87 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.823 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MVRGKIEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AQVSVIIFSQ KGRLYEFSSS 60 DMQDTIKRYH KHAKAGQTNK IEVEEYVEQL KHESTAMAKK IENLEASQRK LLGHGLDSCS 120 VEELQEITGQ LERSVRKIRE RKAHLFAEQM EQLRAKERLL IEENAKLSEE FGAQPRQLLL 180 QQQLSVEEKG AVSYWSQSSL SSEVETELFI GPPVTRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 8e-19 | 1 | 84 | 1 | 86 | MEF2 CHIMERA |
6bz1_B | 8e-19 | 1 | 84 | 1 | 86 | MEF2 CHIMERA |
6bz1_C | 8e-19 | 1 | 84 | 1 | 86 | MEF2 CHIMERA |
6bz1_D | 8e-19 | 1 | 84 | 1 | 86 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques. {ECO:0000269|PubMed:18162590, ECO:0000269|PubMed:21689171}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G287500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP938964 | 0.0 | KP938964.1 Prunus mume SOC1-like protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007219737.2 | 1e-157 | MADS-box protein AGL42 isoform X1 | ||||
Swissprot | Q9FIS1 | 3e-80 | AGL42_ARATH; MADS-box protein AGL42 | ||||
TrEMBL | A0A251QN70 | 1e-156 | A0A251QN70_PRUPE; Uncharacterized protein | ||||
STRING | XP_008234315.1 | 1e-139 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF666 | 30 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 1e-82 | AGAMOUS-like 42 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G287500.1.p |