PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G287000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27570.2 Da    PI: 7.9506
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G287000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.31.4e-30958150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        +rienk+nrqvtfskRrng+lKKA+ELSvLCda+va+ii ss+gklye+ 
  Prupe.2G287000.1.p  9 ERIENKINRQVTFSKRRNGLLKKAYELSVLCDAQVALIISSSSGKLYEFG 58
                        69**********************************************95 PP
2K-box91.41.6e-30791718100
               K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         +++e+++++l+qe++kLk ++e+Lq +qRhllGedLe+L lkeL +Le+qL+k l+k R++K+e++++ +eel++ke++l e+n++L+++l
  Prupe.2G287000.1.p  79 NVAENETQNLYQEVSKLKVKYESLQLSQRHLLGEDLEKLRLKELVNLENQLDKTLSKARQRKTEMMYDRLEELRQKENDLGEKNQQLKSEL 169
                         38999************************************************************************************99 PP

               K-box  99 ee 100
                         ee
  Prupe.2G287000.1.p 170 EE 171
                         86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.413161IPR002100Transcription factor, MADS-box
SMARTSM004329.1E-39160IPR002100Transcription factor, MADS-box
CDDcd002653.66E-42277No hitNo description
SuperFamilySSF554552.49E-32284IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-2482169IPR002487Transcription factor, K-box
PROSITE profilePS5129715.31685175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGRVVLER IENKINRQVT FSKRRNGLLK KAYELSVLCD AQVALIISSS SGKLYEFGST  60
DVNKILERYR QCCYSLQGNV AENETQNLYQ EVSKLKVKYE SLQLSQRHLL GEDLEKLRLK  120
ELVNLENQLD KTLSKARQRK TEMMYDRLEE LRQKENDLGE KNQQLKSELE EEGHGQATLQ  180
GPGELPLTKD NRIESEHPTL RLQIWDHQPV PQEKAADDDQ GRTMVGGSKS NCNQRGWLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-22169169MEF2 CHIMERA
6byy_B1e-22169169MEF2 CHIMERA
6byy_C1e-22169169MEF2 CHIMERA
6byy_D1e-22169169MEF2 CHIMERA
6bz1_A1e-22169169MEF2 CHIMERA
6bz1_B1e-22169169MEF2 CHIMERA
6bz1_C1e-22169169MEF2 CHIMERA
6bz1_D1e-22169169MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G287000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3475490.0KP347549.1 Prunus pseudocerasus MADS-box protein MADS1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007220094.21e-174MADS-box transcription factor 6
SwissprotQ8LLR13e-81MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A251QMZ31e-173A0A251QMZ3_PRUPE; Uncharacterized protein
STRINGXP_008234477.11e-164(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.13e-69AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]