PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G278500.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 405aa    MW: 45260.1 Da    PI: 9.9483
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G278500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.12.1e-10208302380
                         EE-..-HHHHT.T-EE--HHH.HTT.........---..--SEEEEEETTS.......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                  B3   3 kvltpsdvlks.grlvlpkkfaeeh.........ggkkeesktltledesg.......rsWevkliyrkksgryvltkGWkeFvkangLke 76 
                         k+l + d +ks +r+++p + +++           ++kee+++++l d+         r+W++k    k+s+ yvl++ W++F+k n+Lke
  Prupe.2G278500.1.p 208 KKLRKTDLSKSgNRMSMPLNQISSTdfleddergRLEKEETMKVQLIDPGLvqgdinlRRWNMKKMNGKNSKIYVLRTQWSDFAKRNHLKE 298
                         67777777776699*******999999*999*9988999*********988999***********77888888****************** PP

                         T-EE CS
                  B3  77 gDfv 80 
                         +D v
  Prupe.2G278500.1.p 299 KDLV 302
                         **87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037541.6E-14200290IPR005508B3 domain-containing protein
SuperFamilySSF1019364.32E-12205312IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-10205315IPR015300DNA-binding pseudobarrel domain
CDDcd100176.25E-9206313No hitNo description
PROSITE profilePS508638.896207323IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MGWHSSTDSD FDGIFNRKLT NMGWLLEIVR FDTEKYMQED LLKQTSNINK EPNCPAAERE  60
SEIAEAAHPV APSMVSSESK GEGLMKEKAF KNPALIEPKK QRSSDGPKLM HTAIASARKT  120
NSLKRKFQSR DDDDSTNWAP VECKKQRMMM MLKKKNANKG TSSINKITPK KKEELSSLSS  180
SAHHDLPEAF KRKIASLGGT KVALVIQKKL RKTDLSKSGN RMSMPLNQIS STDFLEDDER  240
GRLEKEETMK VQLIDPGLVQ GDINLRRWNM KKMNGKNSKI YVLRTQWSDF AKRNHLKEKD  300
LVQVWSFRVN GALYLALALV NESCGGDQKE SDDGAYKSSV VDGEISSGGS HGGAEVIEER  360
RDGNNIGESS VTNGSNHTIS PSHSESGSKH EQAARMEDRR RKVF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G278500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021823356.10.0B3 domain-containing protein At1g32030-like
TrEMBLA0A251QML50.0A0A251QML5_PRUPE; Uncharacterized protein
STRINGEMJ206070.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.15e-13B3 family protein