PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G272500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 27069.2 Da PI: 6.3093 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.1 | 9e-18 | 147 | 197 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp k +r++lg+f+t +Aaka++ a+ kl+g Prupe.2G272500.1.p 147 HYRGVRRRP-WGKYAAEIRDP---ArKGTRVWLGTFDTDVDAAKAYDCAAFKLRG 197 7********.**********8...4445**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-31 | 146 | 206 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.03E-30 | 147 | 205 | No hit | No description |
SMART | SM00380 | 1.1E-36 | 147 | 211 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.526 | 147 | 205 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-12 | 147 | 197 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-22 | 147 | 206 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.7E-13 | 148 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-13 | 187 | 207 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MHANQLSCSH IKIATPTHEE QDESTLELIR QHLLGDFTFT DGFFSHPNFQ IPDDDFSYDF 60 QPLVVKPECS LSESESTSPI SDPHCHNPQP CNFETKPETI ISPSIKVEPL NLSSPTKGKT 120 TTSDCATPSS PDDKFQQVSG SGEVLRHYRG VRRRPWGKYA AEIRDPARKG TRVWLGTFDT 180 DVDAAKAYDC AAFKLRGRKA ILNFPLEAGQ SSQPPVNTSR KRRRSVKQEE EELPETELLK 240 P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-29 | 146 | 206 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 8e-29 | 146 | 206 | 4 | 64 | ATERF1 |
3gcc_A | 8e-29 | 146 | 206 | 4 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 219 | 223 | RKRRR |
2 | 219 | 224 | RKRRRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G272500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT369547 | 0.0 | KT369547.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007219565.2 | 1e-180 | ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | A0A251QMB6 | 1e-179 | A0A251QMB6_PRUPE; Uncharacterized protein | ||||
STRING | EMJ20764 | 1e-168 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 5e-43 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G272500.1.p |