PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G272300.1.p | ||||||||
Common Name | PRUPE_ppa010186mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 29210.8 Da PI: 7.0501 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 3.8e-19 | 125 | 175 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg++ t eeAa a+++a+ +++g Prupe.2G272300.1.p 125 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETSEEAALAYDRAAYRMRG 175 7********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.3E-32 | 124 | 184 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.16E-32 | 125 | 184 | No hit | No description |
PROSITE profile | PS51032 | 24.197 | 125 | 183 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.21E-23 | 125 | 185 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.3E-15 | 125 | 175 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-36 | 125 | 189 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 126 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 149 | 165 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MIMSDNNQSL MPCLTEQWGD LPFKVDDSED MIVYSSLNDA LSFGWLPDHS LYEYVKPEPL 60 LYDPFDHHNA LPNLFTQFQQ YHDVNNAPII LPFEHHHHHD QKQVQVADAA DQNKAPKSGV 120 ARGRHYRGVR QRPWGKFAAE IRDPAKNGAR VWLGTYETSE EAALAYDRAA YRMRGSKALL 180 NFPHRIGLNE PPPVRVTGKR KEPEAEAAAA ADASTTTPKS AKRTKASSVA EHDHHQANVC 240 LTRQKTSMGL LPLGEQLLVS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-37 | 121 | 190 | 1 | 70 | ATERF1 |
3gcc_A | 4e-37 | 121 | 190 | 1 | 70 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.16216 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269|PubMed:7756828}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G272300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ825095 | 0.0 | HQ825095.1 Prunus persica cultivar Venture ethylene responsive factor (ERF1.b) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007218833.1 | 0.0 | ethylene-responsive transcription factor 2 | ||||
Swissprot | Q40479 | 4e-77 | ERF2_TOBAC; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | M5X1T1 | 0.0 | M5X1T1_PRUPE; Uncharacterized protein | ||||
STRING | EMJ20032 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16916 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 3e-55 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G272300.1.p |
Entrez Gene | 18785140 |
Publications ? help Back to Top | |||
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