PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.2G263700.1.p

Common Name

PRUPE_ppa007645mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bZIP

Protein Properties

Length: 361aa MW: 39864.2 Da PI: 6.1931

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.2G263700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.1	4.9e-10	159	207	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + Prupe.2G263700.1.p 159 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQ 207 9****************************************99887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.7E-16	155	219	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.657	157	220	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.0E-8	159	213	No hit	No description
SuperFamily	SSF57959	9.85E-11	159	210	No hit	No description
Pfam	PF00170	7.3E-9	159	207	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.11E-23	160	209	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MQDPANPKPD PSSSSQASQR PRMTTPFPDA SPSLSFRGSY HRRAQSEVQF RIPDDLDLLQ 60 DPFDGPSGSF EELGGSEDDL FCTYMDIEKL GSKLDDGPSD PKVENPGGSA ETGVELGGEM 120 SARPRHRHSN SVDASLDSIE AKKAMAPDKL AELWTVDPKR AKRILANRQS AARSKERKAR 180 YISELERKVQ TLQTEATTLS AQLTLFQRDT TGLSTENSEL KLRVQAMEQQ AQLRDALNDA 240 LKKELERLKI ATGEVLTHTD SYNMGMHQSP YSQSPFFPSQ SQAGQRDSQN IHMPQFHPFQ 300 PNMSAPHQPM LSAAQSHACS DMLQQDSIGR FQGLDISNRG SHLVRPEGPS ISAGESNRRF 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MQDPANPKPD PSSSSQASQR PRMTTPFPDA SPSLSFRGSY HRRAQSEVQF RIPDDLDLLQ  60
DPFDGPSGSF EELGGSEDDL FCTYMDIEKL GSKLDDGPSD PKVENPGGSA ETGVELGGEM  120
SARPRHRHSN SVDASLDSIE AKKAMAPDKL AELWTVDPKR AKRILANRQS AARSKERKAR  180
YISELERKVQ TLQTEATTLS AQLTLFQRDT TGLSTENSEL KLRVQAMEQQ AQLRDALNDA  240
LKKELERLKI ATGEVLTHTD SYNMGMHQSP YSQSPFFPSQ SQAGQRDSQN IHMPQFHPFQ  300
PNMSAPHQPM LSAAQSHACS DMLQQDSIGR FQGLDISNRG SHLVRPEGPS ISAGESNRRF  360
*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269\|PubMed:27896439}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.2G263700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007218181.1	0.0	transcription factor RF2b
Swissprot	O22873	1e-121	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	M5XK21	0.0	M5XK21_PRUPE; Uncharacterized protein
STRING	EMJ19380	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-115	bZIP family protein

Link Out ? help Back to Top
Phytozome	Prupe.2G263700.1.p
Entrez Gene	18785407

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]