PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.2G253200.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 549aa MW: 61778.2 Da PI: 9.7607

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.2G253200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43	1.2e-13	323	407	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a ++ +l+rg+l++++W+ev++++ +g+ ++ +qCk++++ l+k+yk +k + st+p++++l+ Prupe.2G253200.1.p 323 CWSEGATSTLITAWGDRYLQLNRGNLRQNDWKEVADAVnsgLNGGVkaPKTDVQCKNRIDTLKKKYKLEKSKPSP------STWPFYHRLH 407 7***********************************999555552278*************99887775......68****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51375	8.824	147	181	IPR002885	Pentatricopeptide repeat
Pfam	PF12854	6.4E-6	177	210	IPR002885	Pentatricopeptide repeat
PROSITE profile	PS51375	10.698	182	216	IPR002885	Pentatricopeptide repeat
TIGRFAMs	TIGR00756	4.8E-4	185	215	IPR002885	Pentatricopeptide repeat
Pfam	PF13837	2.0E-25	322	409	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence Send to blast
MALLGKLPYK PLNSQYILTV AARFFTTQSP NFNTFPDIPT SAYYDDQVNA ANRSRDFDDL 60 PHLLNKRVKD NCFNTTNTFK FITKTDASLS VLNDLCRTLA RSLCVVEMMA RENHGLNACS 120 FHPILNVVME EAWGVVDLMR RLGASPDLTA YNYLLIAYCF FGDLDLTTAV LKRIEEKGMS 180 ADTRTYDALV LGACKVGKVE GALVLLRRMV DDGVPMQLST HVYMIDSLLN ASFYDQAVKF 240 VRSFSGRDTW LNKKNFGSLG YRLIKLKSPV FFLIFRSTPN PSLLPTPKNP AVSLFLHHRP 300 EPNPKPFMHR PTRTRAPGGR DDCWSEGATS TLITAWGDRY LQLNRGNLRQ NDWKEVADAV 360 NSGLNGGVKA PKTDVQCKNR IDTLKKKYKL EKSKPSPSTW PFYHRLHSLI GSSPDAAVST 420 KRKPSIPTLT VKSPDLKPKP PGGSRESSIG CEDGEDCNGD SVRKRRMEAV GLSGGAACRE 480 LAGAILKFGE LYERMENLKQ EQMMELEKQR MEFTKELEFQ RLNMFKDAQV ELEKMKRPKY 540 APCRGKKL*

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence Send to blast

MALLGKLPYK PLNSQYILTV AARFFTTQSP NFNTFPDIPT SAYYDDQVNA ANRSRDFDDL  60
PHLLNKRVKD NCFNTTNTFK FITKTDASLS VLNDLCRTLA RSLCVVEMMA RENHGLNACS  120
FHPILNVVME EAWGVVDLMR RLGASPDLTA YNYLLIAYCF FGDLDLTTAV LKRIEEKGMS  180
ADTRTYDALV LGACKVGKVE GALVLLRRMV DDGVPMQLST HVYMIDSLLN ASFYDQAVKF  240
VRSFSGRDTW LNKKNFGSLG YRLIKLKSPV FFLIFRSTPN PSLLPTPKNP AVSLFLHHRP  300
EPNPKPFMHR PTRTRAPGGR DDCWSEGATS TLITAWGDRY LQLNRGNLRQ NDWKEVADAV  360
NSGLNGGVKA PKTDVQCKNR IDTLKKKYKL EKSKPSPSTW PFYHRLHSLI GSSPDAAVST  420
KRKPSIPTLT VKSPDLKPKP PGGSRESSIG CEDGEDCNGD SVRKRRMEAV GLSGGAACRE  480
LAGAILKFGE LYERMENLKQ EQMMELEKQR MEFTKELEFQ RLNMFKDAQV ELEKMKRPKY  540
APCRGKKL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5i9d_A	4e-14	36	259	42	437	pentatricopeptide repeat protein dPPR-U8A2
5i9h_A	4e-14	36	254	42	437	pentatricopeptide repeat protein dPPR-U8G2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.2G253200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A251QPP0	0.0	A0A251QPP0_PRUPE; Uncharacterized protein
STRING	VIT_13s0067g01440.t01	1e-174	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05550.1	5e-60	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Prupe.2G253200.1.p