PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G252700.1.p | ||||||||
Common Name | PRUPE_ppa017892mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 240aa MW: 26470.7 Da PI: 6.5128 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.5 | 7.2e-19 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+q+G+++W++I+ ++ gR++k+c++rw + Prupe.2G252700.1.p 12 KGSWSPQEDSTLIKLVAQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 57 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 58.5 | 1.5e-18 | 66 | 108 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T++Ed ++v+a++++G++ W+tIar ++ gRt++ +k++w++ Prupe.2G252700.1.p 66 SFTPQEDNIIVRAHALHGNK-WATIARLLP-GRTDNAIKNHWNST 108 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.455 | 7 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-29 | 10 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-15 | 11 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-18 | 12 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 13 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.61E-15 | 14 | 56 | No hit | No description |
SMART | SM00717 | 1.2E-15 | 63 | 111 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.104 | 63 | 113 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.9E-16 | 65 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-12 | 66 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-23 | 66 | 112 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MSVINSDEDR VKGSWSPQED STLIKLVAQH GPRNWSLIST GIPGRSGKSC RLRWCNQLSP 60 TVQHKSFTPQ EDNIIVRAHA LHGNKWATIA RLLPGRTDNA IKNHWNSTLR RRRQLAELSS 120 ASSDSNSVAQ IRYEPGMKRQ CLRASPEPDS FKADVGGDGV VETSLTLLPP GEKEENEVIL 180 KSEDHDDEGK CAVEMEETCL LTIMQRMIAQ EVRNYVDGLR AEAGPTSFGL QSAGLQNDP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-39 | 11 | 112 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G252700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC770027 | 5e-81 | KC770027.1 Pyrus pyrifolia microsatellite TXY079 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007221111.2 | 1e-179 | transcription factor MYB25 | ||||
TrEMBL | M5XTD9 | 1e-177 | M5XTD9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ22310 | 1e-178 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11600 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 3e-54 | myb domain protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G252700.1.p |
Entrez Gene | 18785384 |