PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G250200.1.p | ||||||||
Common Name | PRUPE_ppa001277mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NF-X1 | ||||||||
Protein Properties | Length: 866aa MW: 96778.5 Da PI: 8.361 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 18.1 | 6e-06 | 392 | 411 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ C+ G+CppC++ Prupe.2G250200.1.p 392 CGRHACKRRCCDGDCPPCSE 411 ******************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 3.36E-6 | 61 | 138 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 66 | 132 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd06008 | 3.65E-6 | 167 | 215 | No hit | No description |
Pfam | PF01422 | 0.07 | 179 | 196 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.072 | 179 | 197 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.28E-7 | 221 | 260 | No hit | No description |
SMART | SM00438 | 0.13 | 231 | 250 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.42 | 233 | 249 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.16E-8 | 275 | 318 | No hit | No description |
Pfam | PF01422 | 0.076 | 285 | 303 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0023 | 285 | 304 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.34E-8 | 329 | 378 | No hit | No description |
Pfam | PF01422 | 0.0032 | 339 | 357 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.096 | 339 | 359 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 6.56E-8 | 382 | 430 | No hit | No description |
Pfam | PF01422 | 8.4E-4 | 392 | 410 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0092 | 392 | 411 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.82E-10 | 409 | 456 | No hit | No description |
Pfam | PF01422 | 0.0071 | 413 | 437 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.015 | 419 | 438 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 60 | 476 | 497 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 4.7 | 486 | 496 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 75 | 505 | 514 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.17 | 587 | 598 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 8.6 | 587 | 620 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.084 | 630 | 647 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.019 | 630 | 648 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 6.5 | 693 | 714 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 20 | 694 | 712 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000037 | Biological Process | regulation of stomatal complex patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 866 aa Download sequence Send to blast |
MSSPHSDSDT DSDQSQSGSE PVRHSDLSDS IFRSYLEFTG RSSATNTDLS KIQSFLTSSS 60 SGALSCLICL ERIRPSHPTW SCTSVCFSVF HLICIQSWAR QASDLSALRA STRLPISAQK 120 AAEVSLWNCP KCRVEYPQSQ IPKTYFCFCG KLENPPSDDP WILPHSCGEV CNRPLNHSCG 180 HHCLLLCHPG PCPSCPKLVK ARCFCGSVQD VRRCGFKNFS CNNVCKKLLA CRIHCCSEIC 240 HQGPCPPCPV RAVYRCQCGK REEERECCER LDFRCEEPCE KVLGCGQHKC SKGCHSEDCG 300 PCPFQGMRTC PCGKTVHEGL SCKESVPLCG ATCSKMLSCG YHRCPERCHR GQCIVTCRTV 360 VIKSCRCGSL KKEVPCHQDL TCERKCQRQR DCGRHACKRR CCDGDCPPCS EVCGRKLRCK 420 NHKCPSPCHR GACAPCPVMV TIACLCGETH FEVPCGIEMD QKPPRCPKPC PITLLCRHGK 480 NRKPHKCHYG ACPPCRVLCE EEYPCGHKCK LRCHGPRPPP NPEFTLKPKK KKSLHQSECT 540 PGSPCPPCPE HVWRSCVGQH IGVERMMVCS DKTLFSCENL CGNPLPCGNH FCTKTCHPLK 600 NQSLPSVQQA RSEPCEKCHL PCGKEREPAC SHPCPLSCHP GDCPPCKVLV KRSCHCGSMV 660 HVFECIYYNS LSEKEQMAAR SCGGPCHRKL PYCNHLCPEL CHPGQCSFPE KCSKKVTVRC 720 ACQSLKKEWL CHDVQAAYRN AGSDPKDISK NQFGHALIPC NSNCKSKLKV IDSELQLRRP 780 KTVEVKEPDT DKHGPKRKKR RERVQEVTQI STLQKIVSNV KRFLLLVTLL LVLVAVSYYG 840 YKGLIWLNDW MNEVEEKRQG RYPRI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 794 | 800 | PKRKKRR |
2 | 796 | 802 | RKKRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.17655 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G250200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007220260.1 | 0.0 | NF-X1-type zinc finger protein NFXL2 | ||||
Swissprot | Q9FFK8 | 0.0 | NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2 | ||||
TrEMBL | M5X693 | 0.0 | M5X693_PRUPE; Uncharacterized protein | ||||
STRING | EMJ21459 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10225 | 32 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05660.1 | 0.0 | sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G250200.1.p |
Entrez Gene | 18787093 |