PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G244100.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 466aa    MW: 50856.3 Da    PI: 6.7238
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G244100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-1781126147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+W++eEd  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  Prupe.2G244100.1.p  81 RGPWSPEEDAVLSRLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 126
                         89******************************.***********985 PP
2Myb_DNA-binding57.33.7e-18133177147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r+++++eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ 
  Prupe.2G244100.1.p 133 RKPFSEEEDHIIVSAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 177
                         789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.59176127IPR017930Myb domain
SuperFamilySSF466897.49E-3178174IPR009057Homeodomain-like
SMARTSM007174.1E-1580129IPR001005SANT/Myb domain
PfamPF002491.2E-1681126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-2682134IPR009057Homeodomain-like
CDDcd001672.13E-1483125No hitNo description
PROSITE profilePS5129426.024128182IPR017930Myb domain
SMARTSM007178.6E-16132180IPR001005SANT/Myb domain
PfamPF002498.5E-16133177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-23135181IPR009057Homeodomain-like
CDDcd001671.11E-11135178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MILRRLVVFA CCSLLRLKKT NRTPNQPTPS LPMTVPNDAV SKQGDDRPAE SELVRGTEAE  60
LIELGDATEL NEGALSSGKV RGPWSPEEDA VLSRLVSKFG ARNWSLIARG IPGRSGKSCR  120
LRWCNQLDPC VKRKPFSEEE DHIIVSAHAI HGNKWAAIAR LLPGRTDNAI KNHWNSTLRR  180
KCIDRGKFKP EPDMMEDASF DRTKASSEET LSVGNISSFK TPEGREVLMD NRLDQLDERV  240
QAKEGCGVAE SNYHSTLIAG SSGHPTLLGE SKEQSSLCRP VARVSAFSVY DPPSGPANTS  300
TFSRIVPSHG PLVQTCTLDF GFGNFVEGAC NEPMVPLRCG HGCCDPSKGH SQSSLLGPEF  360
VEYDEPPSFS SHELISIATD LNKIAWIKSG LENNGTRITE NAASQRVSQG ATTTSQMGLS  420
VHNSTNDQMR YEEGRNKLMG MMTEVLSTQV PRQTFAMPTE VEGLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-39801816107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G244100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007218805.20.0transcription factor MYB25
TrEMBLA0A251QM500.0A0A251QM50_PRUPE; Uncharacterized protein
STRINGXP_008233695.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-104myb domain protein 109