PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.2G238900.1.p

Common Name

PRUPE_ppa018815mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 224aa MW: 25228.3 Da PI: 4.6351

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.2G238900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121	6.5e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkC+ +Cv+apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdPvyG+++ i++lqqq+ l Prupe.2G238900.1.p 7 SCGACKFLRRKCTGECVFAPYFCYDQaADHFAAVHKVFGASNVSKLLLHLPVQNRSDAAITMSYEALARMRDPVYGCFSQIFALQQQVVYL 97 6**********************9789********************************************************** PP DUF260 91 kaelallkee 100 ++e+++l+++ Prupe.2G238900.1.p 98 QEEIETLGNQ 107 ***99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.687	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.1E-36	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MTGFGSSCGA CKFLRRKCTG ECVFAPYFCY DQAADHFAAV HKVFGASNVS KLLLHLPVQN 60 RSDAAITMSY EALARMRDPV YGCFSQIFAL QQQVVYLQEE IETLGNQMVN FATGHSSNSF 120 SELQVFSQHD AVETQYLQSQ LPEPLLLPVM ENATANQAFN SQMDIQMLPL HEWEEVNLFG 180 DQSVPDPLER FLEGPQENLG HNPWLNETAN TRNYNKGSRW DLY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-35	3	127	7	130	LOB family transfactor Ramosa2.1
5ly0_B	2e-35	3	127	7	130	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.2G238900.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007221130.1	1e-169	LOB domain-containing protein 33
Swissprot	Q9LHS8	5e-56	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	M5X8P1	1e-167	M5X8P1_PRUPE; Uncharacterized protein
STRING	EMJ22329	1e-168	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9196	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	2e-58	LOB domain-containing protein 33

Link Out ? help Back to Top
Phytozome	Prupe.2G238900.1.p
Entrez Gene	18787528

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]