PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G237300.1.p
Common NamePRUPE_ppa021438mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 669aa    MW: 75561.2 Da    PI: 5.6225
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G237300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS396.33.3e-1212946651374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL+ cA+av+++d +  ++lL+++++++sp gd+mqRla+yf+ +L+ar+a+ ++ +++ l ++++     +++l+a++l+ +++P+ 
  Prupe.2G237300.1.p 294 LRTLLTLCAQAVAANDERTGNELLKQIRQHSSPMGDAMQRLAHYFADGLEARMAGYGTPICRDLITKPAL---AADVLKAYHLYLDACPFK 381
                         5789*********************************************************999999887...99**************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         k+s++  N++I++ +e+++r+HiiDf+i +G+QWp+L+q L+sRp+gpp+lRiTg++ p++g   +e++eetg+rLa++Ae+ +vpfefn+
  Prupe.2G237300.1.p 382 KLSNFFSNKTIMNVAEKATRLHIIDFGIHYGFQWPSLIQNLSSRPGGPPKLRITGIDLPQPGfrPAEMVEETGQRLANYAETYKVPFEFNA 472
                         *************************************************************9*9*************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a++++++++e+L+++++E+l+Vn+v++l rllde+v +es++d vLkl+++++P+v++++  + +++++ Fl+rf eal ++s++fd+l
  Prupe.2G237300.1.p 473 -IAQTWDTIQIEDLKIDRDEVLVVNSVHRLRRLLDETVMVESPKDMVLKLIRKINPDVFTLAIVNGSYSAPFFLTRFREALFHFSTMFDML 562
                         .7***************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         e+++p+++ er+ +Ere++gr+++nv+aceg+er+er et+++W+ r  +aGF+++pl+++++k ak  l+ ++ + + ++e+s++l+lgW
  Prupe.2G237300.1.p 563 ETNVPHDAPERMLIEREIFGRQAMNVIACEGSERIERPETYKQWQVRNLRAGFTQLPLNQEIVKIAKDKLHSCYHKDFVMDEDSQWLLLGW 653
                         **************************************************************************888************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         k+r  +++S+Wr
  Prupe.2G237300.1.p 654 KGRIGYALSSWR 665
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.271268645IPR005202Transcription factor GRAS
PfamPF035141.1E-118294665IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MYPDEDSPEE SDFSDVVLEY ISQMLMEEDM EEKIEMYQES AALHAAEQSY YELLQENSSS  60
PPCDLIHYAD HNHESHPLHC SYNSTTSGSA RSIRDCDLLE YKSLHVASQS TSLPFHAPSN  120
ETGNVVDGFA DSPLSILRDP EFSNETQLVM QFKRGFEEAS RFLPNANSLN VDFESNTLSR  180
KEGKAEAIGM VVKVDKKNEY SSDGSRGKKN PYHEDVSLEG GESNKQSAVY TESTVSSEMF  240
DRHLLNCGQG ESALRETLQN RTIKIVQQNG QSKGSSGGKA RGKRQGSKKD VVDLRTLLTL  300
CAQAVAANDE RTGNELLKQI RQHSSPMGDA MQRLAHYFAD GLEARMAGYG TPICRDLITK  360
PALAADVLKA YHLYLDACPF KKLSNFFSNK TIMNVAEKAT RLHIIDFGIH YGFQWPSLIQ  420
NLSSRPGGPP KLRITGIDLP QPGFRPAEMV EETGQRLANY AETYKVPFEF NAIAQTWDTI  480
QIEDLKIDRD EVLVVNSVHR LRRLLDETVM VESPKDMVLK LIRKINPDVF TLAIVNGSYS  540
APFFLTRFRE ALFHFSTMFD MLETNVPHDA PERMLIEREI FGRQAMNVIA CEGSERIERP  600
ETYKQWQVRN LRAGFTQLPL NQEIVKIAKD KLHSCYHKDF VMDEDSQWLL LGWKGRIGYA  660
LSSWRAAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-512946655375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G237300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007219475.10.0scarecrow-like protein 14
RefseqXP_020412236.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLM5X4260.0M5X426_PRUPE; Uncharacterized protein
STRINGEMJ206740.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]