PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G218000.1.p | ||||||||
Common Name | PRUPE_ppa023989mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25186.8 Da PI: 6.7195 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.3 | 9.8e-42 | 76 | 175 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+++++l+ Prupe.2G218000.1.p 76 PCAACKILRRRCAEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQELPESHRADAVSSMVYEANARIRDPVYGCAGAICQLQKHVSELQ 166 7****************************************************************************************** PP DUF260 92 aelallkee 100 a+la++++e Prupe.2G218000.1.p 167 AQLAKTQAE 175 *****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.935 | 75 | 176 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.5E-42 | 76 | 173 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEFNTSTPSA SSPPLSISQL SSPTASFPSP NNSLQLSNLS SPNYAVKNNI NTNVNNPTSP 60 SPPPPPPPPP PVVLSPCAAC KILRRRCAEK CVLAPYFPPT EPLKFTIAHR VFGASNIIKL 120 LQELPESHRA DAVSSMVYEA NARIRDPVYG CAGAICQLQK HVSELQAQLA KTQAELLNMQ 180 CQQGNLIALI CMDMTQSKDP ILQQQQQQSY LDTSCFLDET NLGTAWEPLW T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-42 | 68 | 183 | 3 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-42 | 68 | 183 | 3 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G218000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007219697.1 | 1e-168 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 4e-72 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | M5X5X5 | 1e-167 | M5X5X5_PRUPE; Uncharacterized protein | ||||
STRING | EMJ20896 | 1e-167 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-69 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G218000.1.p |
Entrez Gene | 18785093 |