PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G211400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 1554aa    MW: 172958 Da    PI: 6.4511
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G211400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.0008915241550123
                          EEET..TTTEEESSHHHHHHHHHH..T CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                          y+C+   Cg sF+  s++ rH r+  H
  Prupe.2G211400.1.p 1524 YQCKveGCGLSFRFVSDFSRHRRKtgH 1550
                          99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.1E-141555IPR003349JmjN domain
PROSITE profilePS5118313.9661657IPR003349JmjN domain
PfamPF023751.4E-141750IPR003349JmjN domain
SMARTSM005586.6E-44294463IPR003347JmjC domain
SuperFamilySSF511971.07E-25295461No hitNo description
PROSITE profilePS5118433.641297463IPR003347JmjC domain
PfamPF023739.7E-36327446IPR003347JmjC domain
SMARTSM003551714411463IPR015880Zinc finger, C2H2-like
SMARTSM003550.1614641488IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.7E-514641501No hitNo description
PROSITE profilePS5015711.86314641493IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-414651492IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014661488IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.7E-1014931518IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.94614941523IPR007087Zinc finger, C2H2
SMARTSM003550.001614941518IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014961518IPR007087Zinc finger, C2H2
SuperFamilySSF576673.18E-1015041546No hitNo description
Gene3DG3DSA:3.30.160.605.1E-1115191547IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.55615241553IPR007087Zinc finger, C2H2
SMARTSM003550.2315241550IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028015261550IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1554 aa     Download sequence    Send to blast
MGDVEIPNWL KGLPLAPEFR PTHTEFADPI AYISKIEKEA SEFGICKIIP PLPKPSKRYV  60
FSNLNKSLAK CPELGSDVNL LNDCSPLKTG SGDGRSDGEA RAVFTTRHQE LGQSVKRVKG  120
AAVQNPPSGV HKQVWQSGEI YTLEQFESKS RAFARSILGT IKEVSPLLIE EMFWKAASEK  180
PIYVEYANDV PGSAFEEPVG QFRYTNRRRR KRNSYHRSRE NSDSKTSDLI SSSERDSHSI  240
EVKNASPKNV SDTCLEVSKS STAPEILSAE ETSQSSRRKN PNACCDTEGT AGWRLSNSPW  300
NLQVIARSPG SLTRFMPDDI PGVTSPMVYI GMLFSWFAWH VEDHELHSMN FLHTGSSKTW  360
YAVPGDYAFD FEELIRTEAF GGNVDRLAAL SLLGNKTTLI SPEVVVASGI PCCRLIQNPG  420
EFVVTFPRAY HVGFSHGFNC GEAANFGTPH WLEVAKEAAV RRAAMNYLPM LSHQQLLYLL  480
TMSFVSRVPR SLLPGVRGSR MRDRQKEERE LSVKKAFVED MLKENDVLSV LLQKESSYHA  540
VLWNPDLLPY TSKEPLTPSA GAPVDMKPKE NATHIQCGNN NNDQNLLFDE MSLYMENMND  600
LYLGSDDLSC DFQVDSGTLA CVACGILGFP FMSVVQPSEK ASVKLQPEYF LAQEFPGVSG  660
LEKSHLSTGH QAFVKGCVTE DPSLVPNVMS PAKDPLIPST TKLNKDWNTV NKFLRPRSFC  720
LEHAVEIVEL LQSKGGANVL VICHSDYQKI KAPSAAIAEE IGCSFNYTEV PLDIASKEDL  780
NLIDLAVDDE HDECREDWTS KLGINLRYCV KVRKNSSSKQ VQHALTLGGL FSKQSPSSDF  840
QRVKWQSKRS RSKKLNHPAH CRPCGSIEKK DEVVERKSDD TSIKRDEKII QYSRRNYKLK  900
AGDSTGAGRI CGYPATCGKG DKHGRMASES NIRDIGNSTS SCERFYSSKS NRMSETYPVV  960
QMLEATKDIS LYSTPSQVAA KLATTTLIAE GVEAQVENHS SEGRNMYGEG CGLVSRDSSD  1020
MQDEIAIPEE ASENKSEVRM VNTVMEISCM NSEVCDSMTL GDEVQPENQT TNKRNDKAPV  1080
SCSSHLSQDP TFAAAEDYDG CPRETHIADE FSKDVSLEFK LEEEIKSLKG RNEEPSLSPT  1140
RQINEPSPAS IEGTSGVPRE LCAAEDSFPG PISCSEEFRT ADRSEGEHVS TSVTQMEITQ  1200
PCISMEESSQ VPRGCSSEEG PDNGVTSDTV QQEVQTTNGP IKEPILGLVI ETENQPTPGS  1260
VEEFEVLRVT CATDNINSFV ALDNKEQRKN RTTNSSEELI YSQDIARCQP LPASIQTYSR  1320
IKREPRAAQG LRNSTEVCLS PLDKELESSG SSIADPAPIP EMGRKRKREV EQIKDDNFNF  1380
NGFIRGPCEG LRPRAGKDAM SRSGIDNLHK EVEEKPVTKK VKKPSDPPNP KYKKEQERKS  1440
HRCDLEGCRM SFGTKAELVL HKRNRCPHEG CGKRFSSHNY AMIHSRVHDD DRPLKCPWKG  1500
CSMSFKWAWA RTEHIRVHTG ERPYQCKVEG CGLSFRFVSD FSRHRRKTGH YVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-55285477145346Transcription factor jumonji (Jmj) family protein
6ip4_A2e-55285477145346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
114211438KKPSDPPNPKYKKEQERK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in cotyledons and leaves. Detected in inflorescences, stems, roots and siliques but not in shoot apical meristems or root tips. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18713399}.
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G211400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020412564.10.0probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A251QJE60.0A0A251QJE6_PRUPE; Uncharacterized protein
STRINGXP_008233302.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]