PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G201000.2.p
Common NamePRUPE_ppa015999mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 433aa    MW: 49530.7 Da    PI: 7.2703
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G201000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.77.1e-31116220199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+kv tpsdv+k++rlv+pk++ae++         + ++  l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ 
  Prupe.2G201000.2.p 116 FDKVVTPSDVGKLNRLVIPKQHAERYfpldstA--NDKGLLLNFQDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFERG 204
                         89*************************999643..346779************************************************66 PP

                         .SS.SEE..EEEEE-S CS
                  B3  86 .gr.sefelvvkvfrk 99 
                          g+  + +l++ ++r+
  Prupe.2G201000.2.p 205 vGDsGKDSLYIDWRRR 220
                         5887888999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-41110221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.76E-30112220IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-25114210No hitNo description
SMARTSM010197.1E-24116221IPR003340B3 DNA binding domain
PROSITE profilePS5086314.819116221IPR003340B3 DNA binding domain
PfamPF023621.9E-28116220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MEFMQRDQKG YSDKEDQDQE DQEEEDIISS KFSSSSHNYN NSNYGSSPKY KATFVPPPLP  60
HHHHQYQQQK PWAVHNHGSP EAINFMDLSL NHEQAAADGA NNNNNWPPNS EREHMFDKVV  120
TPSDVGKLNR LVIPKQHAER YFPLDSTAND KGLLLNFQDR TGKPWRFRYS YWNSSQSYVM  180
TKGWSRFVKE KKLDAGDIVS FERGVGDSGK DSLYIDWRRR PPPPPPPPHH HHHGQYGNCN  240
DRCGGGEGRL YSLLQRPPPS MMSMPLRHHD YFHPSNNVHH PYHHHHHQIM NHQYLQHQIH  300
HQLQVERDQV VHHHHQYPMV IDSVPFVQHG KMSSSGASAG ASTGKRLRLF GVNMECSPNI  360
EEDQTDEHQY QILPSTAIPY NHLPSSSLSA PLELRLPNTI GANQIPLPNT GAADQYLSKK  420
GKSTSLSFYL DS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-671102212114B3 domain-containing transcription factor NGA1
5os9_B1e-671102212114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G201000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007219139.10.0B3 domain-containing transcription factor NGA1
RefseqXP_020412476.10.0B3 domain-containing transcription factor NGA1
SwissprotO827991e-74NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLM5XFQ40.0M5XFQ4_PRUPE; Uncharacterized protein
STRINGEMJ203380.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-65B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]