PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G201000.1.p | ||||||||
Common Name | PRUPE_ppa015999mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 433aa MW: 49530.7 Da PI: 7.2703 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 97.7 | 7.1e-31 | 116 | 220 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+kv tpsdv+k++rlv+pk++ae++ + ++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ Prupe.2G201000.1.p 116 FDKVVTPSDVGKLNRLVIPKQHAERYfpldstA--NDKGLLLNFQDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFERG 204 89*************************999643..346779************************************************66 PP .SS.SEE..EEEEE-S CS B3 86 .gr.sefelvvkvfrk 99 g+ + +l++ ++r+ Prupe.2G201000.1.p 205 vGDsGKDSLYIDWRRR 220 5887888999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.1E-41 | 110 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.76E-30 | 112 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.18E-25 | 114 | 210 | No hit | No description |
SMART | SM01019 | 7.1E-24 | 116 | 221 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.819 | 116 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-28 | 116 | 220 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MEFMQRDQKG YSDKEDQDQE DQEEEDIISS KFSSSSHNYN NSNYGSSPKY KATFVPPPLP 60 HHHHQYQQQK PWAVHNHGSP EAINFMDLSL NHEQAAADGA NNNNNWPPNS EREHMFDKVV 120 TPSDVGKLNR LVIPKQHAER YFPLDSTAND KGLLLNFQDR TGKPWRFRYS YWNSSQSYVM 180 TKGWSRFVKE KKLDAGDIVS FERGVGDSGK DSLYIDWRRR PPPPPPPPHH HHHGQYGNCN 240 DRCGGGEGRL YSLLQRPPPS MMSMPLRHHD YFHPSNNVHH PYHHHHHQIM NHQYLQHQIH 300 HQLQVERDQV VHHHHQYPMV IDSVPFVQHG KMSSSGASAG ASTGKRLRLF GVNMECSPNI 360 EEDQTDEHQY QILPSTAIPY NHLPSSSLSA PLELRLPNTI GANQIPLPNT GAADQYLSKK 420 GKSTSLSFYL DS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-67 | 110 | 221 | 2 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-67 | 110 | 221 | 2 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G201000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007219139.1 | 0.0 | B3 domain-containing transcription factor NGA1 | ||||
Refseq | XP_020412476.1 | 0.0 | B3 domain-containing transcription factor NGA1 | ||||
Swissprot | O82799 | 1e-74 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | M5XFQ4 | 0.0 | M5XFQ4_PRUPE; Uncharacterized protein | ||||
STRING | EMJ20338 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2338 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 4e-65 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G201000.1.p |
Entrez Gene | 18787113 |