PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G190400.3.p
Common NamePRUPE_ppa002230mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 648aa    MW: 71965.3 Da    PI: 7.2512
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G190400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.7e-2376176198
                         EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         f+k+lt sd++++g +++ +k+a+e+     +++ + +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   +
  Prupe.2G190400.3.p  76 FCKILTASDTSTHGGFSVLRKHATEClppldMIQATPTQELNAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--R 164
                         99****************************9556666679************************************************..3 PP

                         SSEE..EEEEE- CS
                  B3  87 rsefelvvkvfr 98 
                          +++el+v+v+r
  Prupe.2G190400.3.p 165 GDNGELRVGVRR 176
                         489999****98 PP
2Auxin_resp102.17.2e-34202281183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         a+ha+ t++ F v+Y+Pr+  s+F++ ++k+++a+++k+svGmRfkm+fe+e+s+err++Gt+vgv dl++ +W++SkWrsLk
  Prupe.2G190400.3.p 202 ASHALMTRTLFVVYYKPRT--SQFIIGLNKYLEAINNKFSVGMRFKMRFEGEESPERRFTGTIVGVGDLSS-QWSESKWRSLK 281
                         6899**************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.05E-4065205IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-3969191IPR015300DNA-binding pseudobarrel domain
CDDcd100178.47E-2074176No hitNo description
PfamPF023622.0E-2176176IPR003340B3 DNA binding domain
SMARTSM010198.8E-2276178IPR003340B3 DNA binding domain
PROSITE profilePS5086311.81576178IPR003340B3 DNA binding domain
PfamPF065077.4E-32202281IPR010525Auxin response factor
PfamPF023091.1E-6522570IPR033389AUX/IAA domain
SuperFamilySSF542775.4E-11529610No hitNo description
PROSITE profilePS5174522.263534615IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MEQLEASTNQ ELNQQIPLFN LPSKILCRVV HIHLLAEQET DEVYAQITLH PEADQSEPTS  60
PDPCIPEPSK PTVHSFCKIL TASDTSTHGG FSVLRKHATE CLPPLDMIQA TPTQELNAKD  120
LHGYEWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDAF VFLRGDNGEL RVGVRRLARQ  180
QSHMPSSVIS SQSMHLGVLA TASHALMTRT LFVVYYKPRT SQFIIGLNKY LEAINNKFSV  240
GMRFKMRFEG EESPERRFTG TIVGVGDLSS QWSESKWRSL KIQWDEHAAV QRPERVSFWE  300
IEPFVASAPI HLVQPVVKSK RPRPVEISSS EITTNSPASA FWYHGSTQTV ELNQLGGVPE  360
VQSSGSQVVW PLRQKESNSS SYSSSRVYSE GIWPSSPHVN VSLSLFPDSK EGNKNVTTGS  420
VLSSVASPVS SKASSKPSNT PIPGQVGKEK KSDSSDLWLF GYNLTNNSKT ASPPESEPVC  480
KAMSCGGKGP TTAAAFEVYQ DLDVSKLSKE QKQVISEASP GETQGKQGLT LSTRTRTKVQ  540
MQGVAVGRAV DLTSLKGYDN LIDELEKMFE IKGELRPQNK WAVVFTDDEN DMMLMGDDQW  600
LDFCKLVKKI FIYSSDEVQK MNRCKLQNSS LDCEGTVSVD SEHRCET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-156130449355Auxin response factor 1
4ldw_A1e-156130449355Auxin response factor 1
4ldw_B1e-156130449355Auxin response factor 1
4ldx_A1e-156130449355Auxin response factor 1
4ldx_B1e-156130449355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319323KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G190400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020412230.10.0auxin response factor 18
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A251QI490.0A0A251QI49_PRUPE; Auxin response factor
STRINGEMJ218250.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.30.0auxin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]