PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G173100.2.p
Common NamePRUPE_ppa002218mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 719aa    MW: 81004.5 Da    PI: 6.3504
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G173100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-08614662247
                         SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                         ++WT+eE+++++d vk  ++      W+ I + ++ ++++ +++s+++++
  Prupe.2G173100.2.p 614 LSWTAEEEKKFKDIVKSNPPSlgitFWDQIFKSFP-KKSRRELVSYYFNV 662
                         58*****************88**************.9**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010147.4E-763155No hitNo description
PROSITE profilePS5101116.13666159IPR001606ARID DNA-binding domain
SMARTSM005012.2E-1067160IPR001606ARID DNA-binding domain
SuperFamilySSF467749.55E-1571165IPR001606ARID DNA-binding domain
PfamPF013881.4E-886152IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.601.4E-1187163IPR001606ARID DNA-binding domain
SMARTSM011899.7E-6516567IPR000949ELM2 domain
SMARTSM007170.0029612665IPR001005SANT/Myb domain
CDDcd001671.08E-5615663No hitNo description
PfamPF002497.4E-6615662IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016575Biological Processhistone deacetylation
GO:0048235Biological Processpollen sperm cell differentiation
GO:0000118Cellular Componenthistone deacetylase complex
GO:0048555Cellular Componentgenerative cell nucleus
GO:0048556Cellular Componentmicrosporocyte nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MQKPPQKNTR AVLGLNSKSM AGWSMVADGS ALDCAKTPKK NETDGFSVDL EPPSEAPERC  60
VLDVPDKLRC WFDQLLGVFL KEISAQGLLR PLPPMIGNGQ RVDLLKLFWV VRKQGGFDTI  120
SKIRVWDSVA KECGLGWGLG WAVKLVYVKY LHLLERVIEN KDLEWSVDIS GLDLTEQFMD  180
LEDKLTKVFP EISDQKVKDG AYPHVELSPK NFKDSNEVGS EVAESDRLKK SVVSEAFLDL  240
DSRRDAGKFC NGDVPLSGGA MKCTVNLMNK NLDLTNSMED VGKVCDNGEV SEVGESGTGK  300
KYNDCDEAVM ILDPSPGEVS SFRKRKRGPS CGSEAGESRR GKKYNDISNE DAAILDPSTD  360
EEAISFWKRK QESLCGMLNW VRMIAKDPCD PAVGSLPERS KWKSFGNEEN WMQVLWAREA  420
IFVKKHADSG AEQSNWQKNQ RMHPSLYDDH FSSSYNLRER LRLEKKLLSG GTMPQSRTGS  480
ESSSPSYSPD MAGMEDQLLG TSDFTSVLDR YPPSHIPLGS NYQAHLPEWT GEASESELKW  540
LGSKFWPLEK PEHRYLIERD PIGKGRQESC GCQVSGSIEC VRFHISEKRL RVKRELGPAF  600
YHWEFNQMGD EVGLSWTAEE EKKFKDIVKS NPPSLGITFW DQIFKSFPKK SRRELVSYYF  660
NVFLLHRRGY QNRFTPNNID SDDEGLESGS VTNGFGDEER KPSKSILKSP HKPHAKCR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G173100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007220625.20.0AT-rich interactive domain-containing protein 1 isoform X2
TrEMBLA0A251QHF60.0A0A251QHF6_PRUPE; Uncharacterized protein
STRINGEMJ218240.0(Prunus persica)