PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G173100.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 812aa    MW: 91981.9 Da    PI: 8.2609
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G173100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.9e-08707755247
                         SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                         ++WT+eE+++++d vk  ++      W+ I + ++ ++++ +++s+++++
  Prupe.2G173100.1.p 707 LSWTAEEEKKFKDIVKSNPPSlgitFWDQIFKSFP-KKSRRELVSYYFNV 755
                         58*****************88**************.9**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010147.4E-7156248No hitNo description
PROSITE profilePS5101116.136159252IPR001606ARID DNA-binding domain
SMARTSM005012.2E-10160253IPR001606ARID DNA-binding domain
SuperFamilySSF467741.14E-14164258IPR001606ARID DNA-binding domain
PfamPF013881.6E-8179245IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.601.6E-11180256IPR001606ARID DNA-binding domain
SMARTSM011899.7E-6609660IPR000949ELM2 domain
SMARTSM007170.0029705758IPR001005SANT/Myb domain
PfamPF002498.6E-6708755IPR001005SANT/Myb domain
CDDcd001671.16E-5708756No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016575Biological Processhistone deacetylation
GO:0048235Biological Processpollen sperm cell differentiation
GO:0000118Cellular Componenthistone deacetylase complex
GO:0048555Cellular Componentgenerative cell nucleus
GO:0048556Cellular Componentmicrosporocyte nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MMAAINKGTV TLPLKNPISF SKSYYFPSKT LSPSHISPKK KKNELGLGGN IKRERERERE  60
RERDKKERAR ERERGQSPKV KNQRLKEDTT THQRVISHQN QNAKTPTKKY KSSTGWSMVA  120
DGSALDCAKT PKKNETDGFS VDLEPPSEAP ERCVLDVPDK LRCWFDQLLG VFLKEISAQG  180
LLRPLPPMIG NGQRVDLLKL FWVVRKQGGF DTISKIRVWD SVAKECGLGW GLGWAVKLVY  240
VKYLHLLERV IENKDLEWSV DISGLDLTEQ FMDLEDKLTK VFPEISDQKV KDGAYPHVEL  300
SPKNFKDSNE VGSEVAESDR LKKSVVSEAF LDLDSRRDAG KFCNGDVPLS GGAMKCTVNL  360
MNKNLDLTNS MEDVGKVCDN GEVSEVGESG TGKKYNDCDE AVMILDPSPG EVSSFRKRKR  420
GPSCGSEAGE SRRGKKYNDI SNEDAAILDP STDEEAISFW KRKQESLCGM LNWVRMIAKD  480
PCDPAVGSLP ERSKWKSFGN EENWMQVLWA REAIFVKKHA DSGAEQSNWQ KNQRMHPSLY  540
DDHFSSSYNL RERLRLEKKL LSGGTMPQSR TGSESSSPSY SPDMAGMEDQ LLGTSDFTSV  600
LDRYPPSHIP LGSNYQAHLP EWTGEASESE LKWLGSKFWP LEKPEHRYLI ERDPIGKGRQ  660
ESCGCQVSGS IECVRFHISE KRLRVKRELG PAFYHWEFNQ MGDEVGLSWT AEEEKKFKDI  720
VKSNPPSLGI TFWDQIFKSF PKKSRRELVS YYFNVFLLHR RGYQNRFTPN NIDSDDEGLE  780
SGSVTNGFGD EERKPSKSIL KSPHKPHAKC R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15264RERERERERERDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G173100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020413494.10.0AT-rich interactive domain-containing protein 1 isoform X1
TrEMBLA0A251QH940.0A0A251QH94_PRUPE; Uncharacterized protein
STRINGEMJ218240.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43731724