PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G156900.1.p | ||||||||
Common Name | PRUPE_ppa001436mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 830aa MW: 90225.2 Da PI: 6.3512 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.4 | 8e-21 | 124 | 179 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k Prupe.2G156900.1.p 124 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 179 688999***********************************************999 PP | |||||||
2 | START | 206.7 | 9.1e-65 | 331 | 555 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela++a++elvk+a+ +ep+W +s e +n +e++++f++ + + +ea+r++g+v+ ++ lve+l++++ +W e+++ + Prupe.2G156900.1.p 331 ELALAAMDELVKLAQTDEPLWLRSLeggrEVLNHEEYMRSFTPCIGlkpngFVTEASRETGMVIINSLALVETLMESN-RWLEMFPclvaR 420 5899************************99***********9999899999***************************.************ PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 +t++vissg galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvSvd ++ + + ++ +++lpSg+++++++ng+s Prupe.2G156900.1.p 421 TSTTDVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDTIRDTSGAPTFMNCRRLPSGCVVQDMPNGYS 511 ****************************************************************999************************ PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 kvtwveh++++++++h+l+r++++sg+ +ga++wvatlqrqce+ Prupe.2G156900.1.p 512 KVTWVEHAEYDESQVHQLYRPMLSSGMGFGAQRWVATLQRQCEC 555 ******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.23E-21 | 104 | 181 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-22 | 108 | 181 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.524 | 121 | 181 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-17 | 122 | 185 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-18 | 124 | 179 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.25E-18 | 124 | 181 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 156 | 179 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.985 | 322 | 558 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.79E-33 | 323 | 555 | No hit | No description |
CDD | cd08875 | 2.55E-125 | 326 | 554 | No hit | No description |
Pfam | PF01852 | 8.8E-57 | 331 | 555 | IPR002913 | START domain |
SMART | SM00234 | 8.6E-47 | 331 | 555 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.02E-23 | 576 | 754 | No hit | No description |
SuperFamily | SSF55961 | 1.02E-23 | 783 | 816 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009827 | Biological Process | plant-type cell wall modification | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0043481 | Biological Process | anthocyanin accumulation in tissues in response to UV light | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 830 aa Download sequence Send to blast |
MSFGGFLDNS TGSGGGARIV ADISYNNTSS STHSNNMPSS ALAQPRLVTQ SLTKSMFNSP 60 GLSLALQTNA DGQGDVTRMA ENFETNVGRR SREEEHESRS GSDNMDGGSG DDQDAADNTN 120 PRKKKRYHRH TPQQIQELEA LFKECPHPDE KQRLELSRRL CLETRQVKFW FQNRRTQMKT 180 QLERHENSLL RQENDKLRAE NMSIRDAMRN PICSNCGGPA IIGEISLEEQ HLRIENARLK 240 DELDRVCALA GKFLGRPISS LATSMGPPLP SSTLELGVGS NGFGGLSSVA TSMPVGPDFG 300 GGIGSAMSVV PHSRPSVTGL DRSMERSMFL ELALAAMDEL VKLAQTDEPL WLRSLEGGRE 360 VLNHEEYMRS FTPCIGLKPN GFVTEASRET GMVIINSLAL VETLMESNRW LEMFPCLVAR 420 TSTTDVISSG MGGTRNGALQ LMHAELQVLS PLVPVREVNF LRFCKQHAEG VWAVVDVSVD 480 TIRDTSGAPT FMNCRRLPSG CVVQDMPNGY SKVTWVEHAE YDESQVHQLY RPMLSSGMGF 540 GAQRWVATLQ RQCECLAILM SSSVPTRDHT AITASGRRSM LKLAQRMTDN FCAGVCASTV 600 HKWNKLNARN VDEDVRVMTR ESLDDPGEPP GIVLSAATSV WLPVSPQRLF DFLRDERLRS 660 EWDILSNGGP MQEMAHIAKG QDPGNCVSLL RARAMNANQS SMLILQETCI DSAGGLVVYA 720 PVDIPAMHVV MNGGDSAYVA LLPSGFAIVP DGPGSRGPMT VKGGGHGSSN GGGGEDATHR 780 VSGSLLTMTF QILVNSLPSA KLTVESVETV NNLISCTVQK IKAALHCES* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00421 | DAP | Transfer from AT4G00730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G156900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007220256.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | M5XQZ7 | 0.0 | M5XQZ7_PRUPE; Uncharacterized protein | ||||
STRING | EMJ21455 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G156900.1.p |
Entrez Gene | 18787087 |
Publications ? help Back to Top | |||
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