PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G152600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 297aa MW: 31620.8 Da PI: 7.3505 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 120.7 | 1.8e-37 | 58 | 161 | 2 | 104 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 a+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ + ++ +++ Prupe.2G152600.1.p 58 APKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsVN-------GALKIPtsa 141 799*************************************************************88888555211.......112222111 PP TCP 89 ...kaaksaa.kskksqksa 104 + ++ + k+k++++s+ Prupe.2G152600.1.p 142 pdpRPGEDPPdKKKRKRNSN 161 21222222221222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-30 | 63 | 152 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.141 | 64 | 118 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MTMTEKRELE PDQATPSVDL RINGGEESDS EEPAGPSQAL MLAPKDERDV AMPVAVHAPK 60 RASTKDRHTK VEGRGRRIRM PATCAARIFQ LTRELGHKSD GETIRWLLEH AEPAIIAATG 120 TGTVPAIAMS VNGALKIPTS APDPRPGEDP PDKKKRKRNS NSEYVDLNDG VSASAGLAPL 180 TTERHHQQPP TAAVQAVVPQ GVLPMWAIPS NGVVPGAFFM VPSASTQPHI FTFPTTVAAA 240 PFINISARPI SSFVGPSSAA ATTHMAASTA PQTLRDFSLE IYDKKELQFM SGSSNH* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00667 | PBM | Transfer from GSVIVG01027588001 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G152600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU945866 | 5e-51 | EU945866.1 Zea mays clone 288123 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007220356.2 | 0.0 | transcription factor TCP9 | ||||
Swissprot | O64647 | 7e-86 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A251QG71 | 0.0 | A0A251QG71_PRUPE; Uncharacterized protein | ||||
STRING | XP_008232850.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 6e-82 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G152600.1.p |