PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G147900.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 750aa    MW: 86010.8 Da    PI: 8.7175
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G147900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1705.6e-2246133290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                          Yn+YA+++GFsvr+ +++++ +++   +  + Cskeg+r +++ + e +  ++ etrtgC+a+++   ++ +g w+v++++ eHnHela
  Prupe.2G147900.1.p  46 LYNSYATRTGFSVRRGQKRYN-TKKVLRQFSYFCSKEGFRLDSDPS-EVSMANKLETRTGCEARIRFAFQNdNGMWKVSHFVYEHNHELA 133
                         7****************9998.66779999************9999.99999****************9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1846133IPR004330FAR1 DNA binding domain
PfamPF105512.4E-15257310IPR018289MULE transposase domain
PROSITE profilePS5096610.126497533IPR007527Zinc finger, SWIM-type
PfamPF044349.8E-6497532IPR007527Zinc finger, SWIM-type
SMARTSM005750.0016508535IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MMLWRVQAVI DIESEEENPM IVNRTENFEE DLLGKVVSTE EEAYNLYNSY ATRTGFSVRR  60
GQKRYNTKKV LRQFSYFCSK EGFRLDSDPS EVSMANKLET RTGCEARIRF AFQNDNGMWK  120
VSHFVYEHNH ELAMPEERQF LRSNRKVSEA HLGVIKTMVD AGIRTTNTYS YLSEEVGGSQ  180
NVGFTKRDCY NVVNKEKMVM IEAGDAQSLI NLFKRKQAED PMFFYTVQVD QENRMTNFFW  240
RDGRSRIDYD CFGDVKIDSF IWLFETFLES MGGRKPKTIF TDQCQAMANG IEKVFPGVCH  300
HLCSWHISQN AARNLGSYYG NPEFKHMFNK CLQGYCETEL EFQSTWDDLL AKFNLTGNLW  360
LKTLYGLRAK WCPVFSQHIF TAKIKSSQRS ESTNNVFHQM STKTMSLTQF VHHYDKQAEK  420
MRSSELEESF RCNQGLSSRI AKSSGLMNHA ATIYTRKIFK LFEKEFVDSL GVMMHEVGSD  480
GTIHSFELNE EGHKRVYIVQ LNSLNCSISC SCKMFESMGL LCRHTLRVLN VKCWSQIPKQ  540
YILKRWTKDA NKGLEASEHG ELLQTKGKSS VTLRRNTLMR TAYDVLTKAS ETENTTRIAL  600
QKLREIAGLI EKEMIKSKGE VNAKIHDSLD DCNATTFDET PVRNPSCVRP KGISNARLKS  660
VMEKRRRKTS KDIVSSRKTK QPSSIGPSYN SSHAPLSSNF LHPDGVPMST NINNHVYPAI  720
SLLTTNGHAY LPPSNQVQEL FMLGNLDSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G147900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020412974.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_020422922.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A251QFY50.0A0A251QFY5_PRUPE; Uncharacterized protein
STRINGEMJ207290.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-86FAR1-related sequence 5