PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G146500.1.p | ||||||||
Common Name | PRUPE_ppa017589mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 25008.5 Da PI: 8.1634 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.3 | 1.5e-39 | 24 | 124 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkC k+C++apyf +eq +++fa+vhk+FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG+v++i++lqqq+ +l Prupe.2G146500.1.p 24 PCGACKFLRRKCIKGCIFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRIPPHKRLDAVVTLCYEALARVRDPVYGCVSHIFTLQQQVVNL 114 7***********************9989*************************************************************** PP DUF260 91 kaelallkee 100 +aela+++++ Prupe.2G146500.1.p 115 QAELAYVQAR 124 ******9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.424 | 23 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.1E-38 | 24 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSGSSTNGSN NNGGGGGGGG GGGPCGACKF LRRKCIKGCI FAPYFDSEQG TAHFAAVHKV 60 FGASNASKLL LRIPPHKRLD AVVTLCYEAL ARVRDPVYGC VSHIFTLQQQ VVNLQAELAY 120 VQARLATLQR APPPLPLPQL ECPPPPRSLH YSSSHINVTS PPCSEFVPTS NLLTHFDPLQ 180 TVPHTAEMTS LFNSLDQELI DGEDLQALAR EFVCRYLPGV RLNKPSTSHQ NF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-38 | 20 | 125 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-38 | 20 | 125 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G146500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007220875.1 | 1e-171 | LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 4e-66 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | M5X800 | 1e-170 | M5X800_PRUPE; Uncharacterized protein | ||||
STRING | EMJ22074 | 1e-171 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 8e-61 | LOB domain-containing protein 19 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G146500.1.p |
Entrez Gene | 18786754 |