PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G136300.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 329aa    MW: 35229.3 Da    PI: 8.1612
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G136300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09279308537
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskK 37 
                         hn+ Er+RRd+iN+++ +L++l+P++   ++ K
  Prupe.2G136300.2.p 279 HNQSERKRRDKINQRMKTLQKLVPNS---SKVK 308
                         9************************8...5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-9272308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.887274328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-9278305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-7279307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-7279308No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MNQCVPSWDL DDISTPPAPR LSLRSSTPSA DVPMLDYEVA ELTWENGQVA MHGLGLPRPP  60
AKPSLTTAKY TTWDKPRASG TLESIVNQAT STLPLPSKPP FDSSGGGSNG ELVSWFDHHR  120
AAAVRSTEVT PSTTMTMDAL VPCRNQSDNS SSHMMESMSM PVVISGSDVV GCSTGVESCS  180
GATGAATQDD DTMLSGKHGS LSRVPETPEW SSRSQSVSGS ATFGMDSHPV TLDSTKASDH  240
DSVCHSRPQR EAGDEDDRKK RSTGKSSVST KRSRAAAIHN QSERKRRDKI NQRMKTLQKL  300
VPNSSKVKLA SRLFAMGTTA CFHINLPK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282287ERKRRD
2283288RKRRDK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G136300.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894230.0KP689423.1 Prunus pseudocerasus isolate Unigene11342 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007217992.10.0transcription factor UNE10
SwissprotQ8GZ382e-69UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A251QFM90.0A0A251QFM9_PRUPE; Uncharacterized protein
STRINGEMJ191910.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]