PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.2G121200.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 297aa MW: 33135.6 Da PI: 9.9452

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.2G121200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46	1.3e-14	7	83	16	87
trihelix 16 emeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +++ +lrrg+lk+++W+ev++++ + ++++qC++k+e+l+kry+ + ++k+ s+ +s++++f++++a Prupe.2G121200.1.p 7 DKWYSLRRGNLKATHWQEVADAVahrcPAASPPKTAVQCRHKMEKLRKRYRTEISRAKSMpLSRFTSSWVHFKRMDA 83 68999**************9977767777899*********************977999********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.2E-15	6	84	No hit	No description
SMART	SM00595	1.2E-4	9	89	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
SSTPIGDKWY SLRRGNLKAT HWQEVADAVA HRCPAASPPK TAVQCRHKME KLRKRYRTEI 60 SRAKSMPLSR FTSSWVHFKR MDAMEKGPAA AKRENSESPG EEDENDENEE EDDQDQELYE 120 ELRYGSNMKS MSKLYRNGVG VGGSGGSSGG GFRIRIPTGV SIAQPGTKVY PKMDPKFGLN 180 SNSGSGSGPG YGSAKVMREC GNSVRPGLGK REREGRERER DPVAEMVSAI KVLGDGFVRM 240 EQMKMEMARE IETMRMEMEM KRTEMILDSQ QRIVEAFAKA VSEKKKKAKR MPSPEA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.2G121200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007221022.1	1e-179	uncharacterized protein LOC18786927
Refseq	XP_008232402.2	1e-179	PREDICTED: uncharacterized protein LOC103331547
TrEMBL	A0A251QER0	0.0	A0A251QER0_PRUPE; Uncharacterized protein (Fragment)
STRING	XP_008232402.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4638	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	5e-48	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Prupe.2G121200.1.p