PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G050100.1.p | ||||||||
Common Name | PRUPE_ppa003628mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 561aa MW: 60790.5 Da PI: 4.8783 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.7e-17 | 39 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++vk++G g+W+++ ++ g+ R++k+c++rw ++l Prupe.2G050100.1.p 39 KGPWTSAEDAILVEYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 86 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.8e-17 | 92 | 135 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l+v++++++G++ W++ a++++ gRt++++k++w++ Prupe.2G050100.1.p 92 KGAFTPEEEHLIVELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 135 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.236 | 34 | 86 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-15 | 38 | 88 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.4E-30 | 38 | 133 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-15 | 39 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-24 | 40 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.09E-12 | 41 | 86 | No hit | No description |
PROSITE profile | PS51294 | 26.351 | 87 | 141 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-15 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-16 | 92 | 135 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-26 | 94 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.59E-11 | 94 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence Send to blast |
MSRTTNESED GVLSKDQIES PLMDESNGGT GNGGIVLKKG PWTSAEDAIL VEYVKKHGEG 60 NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTPEEE HLIVELHAKM GNKWARMAAH 120 LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVCLQALQES QQGQSSGGIN GADRAHHDSL 180 QTNSYEIPDV VFESLKGNNC VLPYVPEIPD LSASGVLMKD LSSSPYCGFM PPTMHRQKRL 240 RESTSLFSTS DGSFKNGFPQ FDHFQDDTCD KVGQSFGLSF PHDPDPTSKS PLSFGVIQGS 300 HSLSNGNSSA SKPTSGAVKL ELPSLQYPET DLGSWSTSPP PPLLESIDAF IQSPPPVGAF 360 ESDCASPRNS GLLDALLHEA KTLSSAKNLC SDKSSNSSSV TPGDIADSST LNICETEWED 420 YRDPISPLGH SATSLFSECT PISASGSSLD EPPPAETFTG CNVKPEPVDQ AWTPDKEKET 480 TPQLDYTRPD ALLASDWLEH STGFKDQGMT DSIASILGDD LATDYRHMAS GTSISNQVWG 540 LGSCLWNNMP AVCQMSSDLP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 37 | 140 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00490 | DAP | Transfer from AT5G06100 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G050100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007218962.1 | 0.0 | transcription factor GAMYB | ||||
Refseq | XP_020413688.1 | 0.0 | transcription factor GAMYB | ||||
Refseq | XP_020413689.1 | 0.0 | transcription factor GAMYB | ||||
TrEMBL | M5X3T1 | 0.0 | M5X3T1_PRUPE; Uncharacterized protein | ||||
STRING | EMJ20161 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 1e-137 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G050100.1.p |
Entrez Gene | 18787675 |