PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G048100.1.p
Common NamePRUPE_ppa024870mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 345aa    MW: 37162.8 Da    PI: 8.8012
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G048100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016153175123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C++ Fs++  L  H++ H
  Prupe.2G048100.1.p 153 FTCNFCKREFSTSQALGGHQNAH 175
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.55E-6150180No hitNo description
Gene3DG3DSA:3.30.160.603.6E-4151179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.531153180IPR007087Zinc finger, C2H2
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAEESRVERL SSTSEASNIS AASDGPPPTQ KDGPENLDQK MKMKLKEKIV IDDSDDDDTQ  60
QPRQQPPPPP VVRSSSSPSP SSRLRLDLKL CNDNSARGSG STSRLELSLF NTSNPGSSNP  120
GSSNPVSRYS QPNETTDENP RGSDDKRSQP RVFTCNFCKR EFSTSQALGG HQNAHKQERA  180
LAKRRQGGLE NMGGVLGHSP FSYYNPYSSF SSPSLYGSFN RSLGVRMDSM IHKPSYPWSS  240
TPGFGRFGHG SGAWSSRAGG LLNFQSTIDR LNLEGLHANA PSGILGHPGT SSAPRFDQEI  300
SAVRNFGGSS SNFGINRPFL GDLIRREPPT SDTDAAGLDL SLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G048100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020412749.10.0uncharacterized protein LOC18785296
TrEMBLA0A251QB460.0A0A251QB46_PRUPE; Uncharacterized protein
STRINGXP_008231613.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.12e-17C2H2 family protein