PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G036500.3.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SRS
Protein Properties Length: 284aa    MW: 29931.5 Da    PI: 7.6501
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G036500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702951.5e-29119173357
              DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqla 57 
                         s+ ++C+dCGn+akk+C++ RCRtCC+ rg+dC+thvkstWvpaa+rrerq   +
  Prupe.2G036500.3.p 119 SKMKACKDCGNKAKKGCEYGRCRTCCRGRGYDCSTHVKSTWVPAARRRERQMGVT 173
                         56679*********************************************97655 PP
2DUF70271.52.6e-22191243102154
              DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                         ++slP++v+++avfrc rv+++++g +elaYq++v+i+Ghvf+G+Lyd+G+++
  Prupe.2G036500.3.p 191 KQSLPDKVRAPAVFRCHRVTAISNGAAELAYQATVKISGHVFQGLLYDHGVDK 243
                         467***********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.4E-25122172IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.9E-24124165IPR006510Zinc finger, lateral root primordium type 1
PfamPF051426.3E-20190242IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016241.0E-24194241IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MLGLRDILLI APTPSSMHQQ NQPISSDLPL PSSTTLGVGL GIFPLLTATP CAPHAPTTAE  60
VNSDSSHFWG LRRCQELNPS KQDMLNFGNH GAQHEQVVEC EGHNNNNENE GGGGGGESSK  120
MKACKDCGNK AKKGCEYGRC RTCCRGRGYD CSTHVKSTWV PAARRRERQM GVTVAVPGVG  180
GGGGGEDANI KQSLPDKVRA PAVFRCHRVT AISNGAAELA YQATVKISGH VFQGLLYDHG  240
VDKDNAFPCI SPSHLETDTN QRNGDSASTP PLPPATACLT STS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G036500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007220689.20.0protein LATERAL ROOT PRIMORDIUM 1 isoform X2
TrEMBLA0A251QBP90.0A0A251QBP9_PRUPE; Uncharacterized protein
STRINGEMJ218880.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.26e-30Lateral root primordium (LRP) protein-related