PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G036500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | SRS | ||||||||
Protein Properties | Length: 305aa MW: 31982.8 Da PI: 8.2639 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 171.1 | 5.5e-53 | 119 | 264 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 s+ ++C+dCGn+akk+C++ RCRtCC+ rg+dC+thvkstWvpaa+rrerq + a + s + + ++ + ++s Prupe.2G036500.1.p 119 SKMKACKDCGNKAKKGCEYGRCRTCCRGRGYDCSTHVKSTWVPAARRRERQMGVTVAVPGVGGGGGGEGSSGSSS-----VAKRPRVVVPS 204 56679*********************************************9999888777666544433333332.....22333334444 PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++ ++ ++slP++v+++avfrc rv+++++g +elaYq++v+i+Ghvf+G+Lyd+G+++ Prupe.2G036500.1.p 205 QNANANI-KQSLPDKVRAPAVFRCHRVTAISNGAAELAYQATVKISGHVFQGLLYDHGVDK 264 4444334.456***********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.7E-53 | 122 | 263 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.2E-24 | 124 | 165 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.1E-24 | 215 | 262 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MLGLRDILLI APTPSSMHQQ NQPISSDLPL PSSTTLGVGL GIFPLLTATP CAPHAPTTAE 60 VNSDSSHFWG LRRCQELNPS KQDMLNFGNH GAQHEQVVEC EGHNNNNENE GGGGGGESSK 120 MKACKDCGNK AKKGCEYGRC RTCCRGRGYD CSTHVKSTWV PAARRRERQM GVTVAVPGVG 180 GGGGGEGSSG SSSVAKRPRV VVPSQNANAN IKQSLPDKVR APAVFRCHRV TAISNGAAEL 240 AYQATVKISG HVFQGLLYDH GVDKDNAFPC ISPSHLETDT NQRNGDSAST PPLPPATACL 300 TSTS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G036500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020414282.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1 isoform X1 | ||||
TrEMBL | A0A251QAI7 | 0.0 | A0A251QAI7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008231670.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5704 | 31 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 5e-33 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G036500.1.p |