PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G028700.1.p | ||||||||
Common Name | PRUPE_ppa005439mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | GRAS | ||||||||
Protein Properties | Length: 462aa MW: 52324.3 Da PI: 6.2812 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 448.2 | 5.5e-137 | 44 | 456 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL++cA++v+sg+ e+a+ L ++s+laspdgd+mqR+aayf eALa r+++ +++lykal++++ + ++see+ + +lf +++P+l Prupe.2G028700.1.p 44 LIQLLYSCANHVASGSIENANIWLDHISQLASPDGDTMQRIAAYFNEALADRMLKAWPGLYKALNSTKIT--SVSEEILVKRLFCDLCPFL 132 689*************************************************************999998..5****************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 k++++++NqaI+ea+ege++vHiiD+ +++QW+ L+q+L++Rpegpp+lRiTg+++ +ke l ++ +rL++ A +l++pf+fn+ + Prupe.2G028700.1.p 133 KVAYVVTNQAIVEAMEGEKMVHIIDLHSCEPAQWIYLIQTLNARPEGPPHLRITGIHE----QKEVLDQMFHRLTEEAGNLNIPFQFNP-I 218 **********************************************************....9**************************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll.................................................desvsles.e 223 +++le+l++e+Lrvk+gEalaV++vlqlh+ll +s s + Prupe.2G028700.1.p 219 VSKLENLDIESLRVKTGEALAVCSVLQLHSLLaadddlrrksplasknlqkvlhmnkltlgewlekdpisaynlspdsalsP--LSGGSpK 307 999*************************************************************************888552..3333344 PP GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314 ++L +++lsPk++v++eqe++hn++++++r++eal++y alfd+le+++pr er+kvE++l+g+ei+n++aceg+er+erhe+lek Prupe.2G028700.1.p 308 MGSFLTSLWGLSPKLMVITEQESNHNGHTLMDRIMEALNFYGALFDCLESTVPRSPMERQKVEKMLFGEEIKNIIACEGTERTERHEKLEK 398 778**************************************************************************************** PP GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 W rle aGF+ vpls++ + qa++ l+ ++ g++++ee+g+lv++W+drpL+s+SaWr Prupe.2G028700.1.p 399 WILRLELAGFGRVPLSYHGMLQARRQLQGYE--GFKIKEENGCLVICWHDRPLFSISAWR 456 ******************************9..**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.514 | 18 | 438 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-134 | 44 | 456 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MAQEDGSPVT SSPLQFFPWL SPGMGSPYPT WLRELKSEER GLYLIQLLYS CANHVASGSI 60 ENANIWLDHI SQLASPDGDT MQRIAAYFNE ALADRMLKAW PGLYKALNST KITSVSEEIL 120 VKRLFCDLCP FLKVAYVVTN QAIVEAMEGE KMVHIIDLHS CEPAQWIYLI QTLNARPEGP 180 PHLRITGIHE QKEVLDQMFH RLTEEAGNLN IPFQFNPIVS KLENLDIESL RVKTGEALAV 240 CSVLQLHSLL AADDDLRRKS PLASKNLQKV LHMNKLTLGE WLEKDPISAY NLSPDSALSP 300 LSGGSPKMGS FLTSLWGLSP KLMVITEQES NHNGHTLMDR IMEALNFYGA LFDCLESTVP 360 RSPMERQKVE KMLFGEEIKN IIACEGTERT ERHEKLEKWI LRLELAGFGR VPLSYHGMLQ 420 ARRQLQGYEG FKIKEENGCL VICWHDRPLF SISAWRFRRY E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-63 | 27 | 458 | 2 | 381 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G028700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007217978.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_008231435.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Refseq | XP_008231436.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Refseq | XP_008245676.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Refseq | XP_008245677.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Refseq | XP_016649864.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Refseq | XP_020414178.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_020414179.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_020414180.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_020414181.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_020414182.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | M5WZE4 | 0.0 | M5WZE4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008231435.1 | 0.0 | (Prunus mume) | ||||
STRING | XP_008245676.1 | 0.0 | (Prunus mume) | ||||
STRING | EMJ19177 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G028700.1.p |
Entrez Gene | 18787182 |
Publications ? help Back to Top | |||
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