PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G014500.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YA
Protein Properties Length: 345aa    MW: 37660.5 Da    PI: 8.4569
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G014500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.42.1e-32172228158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVNaKQy++Il+RRq+Rak e ekkl +k+rkpylheSRh hAlrR+Rg+gGrF
  Prupe.2G014500.1.p 172 EEPVYVNAKQYHGILRRRQSRAKTELEKKL-IKARKPYLHESRHLHALRRARGCGGRF 228
                         69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.1E-37170231IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.948171231IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.3E-27173228IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.7E-23174196IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.7E-23205228IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MMPAKSKDED PHIEHGAQTV LESAIYAQPW WRGVGNNSSS GESAPASSLV DHRDSMVMNG  60
AMQSQANARL DGGANFNKEL RTTGGSQSDQ KNGCKNQQIK SVSSSVVPTM GEHLDPNSQM  120
ELVGHSIVLT SYPYSDPQYG GMLTPYGAQA MLPSHFYGIH HGRMPLPLEM EEEPVYVNAK  180
QYHGILRRRQ SRAKTELEKK LIKARKPYLH ESRHLHALRR ARGCGGRFLN TKKQDDNDEN  240
SSPEKGLSLD ANDSAQSAKS SFQCFPNTSN GSLDSSNVQQ EGSDPWFRAH KNHTLSSDNG  300
NGNGRGPSSA YPSTFGDSKE SVFLGQQREN MQLNGSSRGA IPSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-21172235265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G014500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007218495.20.0nuclear transcription factor Y subunit A-1
TrEMBLA0A251QAJ30.0A0A251QAJ3_PRUPE; Uncharacterized protein
STRINGXP_008231270.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.16e-38nuclear factor Y, subunit A7