PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G014200.1.p | ||||||||
Common Name | PRUPE_ppa025176mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 127aa MW: 14356.6 Da PI: 8.4697 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 105.3 | 5.1e-33 | 4 | 100 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+C++dC+l+pyfp+++p++f v++++Gasnv k+l++l ++ r +a+++l yeA++r++d +yG++gvi++l + + Prupe.2G014200.1.p 4 RCAACKYLRRRCPSDCILSPYFPSSDPQRFTSVNRIYGASNVAKMLQELiMPHLRAEAAETLRYEAQCRIQDLIYGCIGVISQLYINKYKI 94 6***********************************************978888*****************************98776666 PP DUF260 91 kaelal 96 +e l Prupe.2G014200.1.p 95 YTECRL 100 666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.724 | 3 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-33 | 4 | 93 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MSGRCAACKY LRRRCPSDCI LSPYFPSSDP QRFTSVNRIY GASNVAKMLQ ELIMPHLRAE 60 AAETLRYEAQ CRIQDLIYGC IGVISQLYIN KYKIYTECRL AKTRAEIALM NSDGQEPPQA 120 QVDQQI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-30 | 5 | 103 | 12 | 109 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-30 | 5 | 103 | 12 | 109 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G014200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007219658.2 | 2e-89 | LOB domain-containing protein 24 | ||||
Swissprot | P59467 | 1e-39 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
Swissprot | P59468 | 1e-39 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A251Q9A6 | 5e-88 | A0A251Q9A6_PRUPE; Uncharacterized protein | ||||
STRING | EMJ20857 | 5e-85 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 5e-42 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G014200.1.p |
Entrez Gene | 18786836 |