PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G004300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 745aa    MW: 81978.7 Da    PI: 10.2823
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G004300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.74.7e-124598248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                         +W t+E++ll++avk++G ++W+++a +++       +  t+++ck+++++++
  Prupe.2G004300.1.p 45 SSWGTWEELLLACAVKRHGINDWDSVAMELQaktslphLLTTAYNCKLKYHDLR 98
                        57************************************899*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.0E-443100IPR001005SANT/Myb domain
SuperFamilySSF466894.02E-543100IPR009057Homeodomain-like
PfamPF002496.1E-94597IPR001005SANT/Myb domain
CDDcd001673.01E-54697No hitNo description
SMARTSM002974.2E-14328433IPR001487Bromodomain
SuperFamilySSF473702.62E-17330430IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.9E-14333430IPR001487Bromodomain
CDDcd043692.21E-13338428No hitNo description
PfamPF004393.6E-11341412IPR001487Bromodomain
PROSITE profilePS5001411.726343414IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MMEGGTGGTA NHDATTTTHT NNNTNNNNSN NSEPELQDQT TTFTSSWGTW EELLLACAVK  60
RHGINDWDSV AMELQAKTSL PHLLTTAYNC KLKYHDLRRR FNSQHQNDDV ALPSPPPPDH  120
HHHHHDTPSI PWLDDLRKLR VAQLRQELHR NDVSIVSLQL KVKRLEEERE DSSKDDEAKP  180
DLEEEDSKGH RSENDKNIQD EPDRSKPDQE NQSVNGSNST CSKSLDNKPS QEDRVASEPE  240
PHPVLDGSRE PTKGTGAGGH SESESDKGSS ETVAKKRSRE GKGGGDSAGE MRESSEAQSS  300
ASLTRKWNRK RRRRVEVPEQ QRNNEELLLV KSQPLVGLLQ MIRAHEHSSL FERRLPTQES  360
DKYKSMVQQH VDLETIQSKL HKDAYSSCAL SFYRDLLLLF NNAVVFFPKS SLESLTAHQL  420
RRLVLNEMKK NNLITRPPPN PSPSSEPSDS LPAAAVHAPP PTTTPPCPPP PTQPPKRPDQ  480
LERSDSLLAK HKSTAPIIVC RKRSSISSKP SAAASIFDVK PKGEQQQPKQ QEEGDEKKKA  540
TAFDVKTPIN NNKASSKDDV AEEHKGGGAG AKAKDNPVTT GTRSSRRTHH ENNNNKDGSG  600
STKKQTGTPK ADKKSKTEAA ALDKKRSAAA DFLKRIKRNA PASDTLKSGS GSGSGTSTRS  660
GGGEQKRRGG GKVDKVKERV LRQSGGDKKK QAKEESSSPS KRSVGRPPKK AAAVTANVVA  720
SSKRPRENGG KQEASRRPRK RSRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308312RKRRR
2309314KRRRRV
3735743RRPRKRSRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.54313e-64fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G004300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007220902.20.0uncharacterized protein LOC18785658
TrEMBLA0A251Q8T00.0A0A251Q8T0_PRUPE; Uncharacterized protein
STRINGEMJ221010.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-83DNA-binding bromodomain-containing protein