PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G004000.4.p
Common NamePRUPE_ppa007421mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 366aa    MW: 39923.9 Da    PI: 6.7808
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G004000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.6e-18206260256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Prupe.2G004000.4.p 206 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 260
                         778899***********************************************98 PP
2HD-ZIP_I/II126.71e-40206295191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
  Prupe.2G004000.4.p 206 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLHKELQELR-AL 295
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-18180263IPR009057Homeodomain-like
SuperFamilySSF466892.57E-18199263IPR009057Homeodomain-like
PROSITE profilePS5007117.054202262IPR001356Homeobox domain
SMARTSM003893.9E-16204266IPR001356Homeobox domain
PfamPF000462.0E-15206260IPR001356Homeobox domain
CDDcd000867.73E-17206263No hitNo description
PROSITE patternPS000270237260IPR017970Homeobox, conserved site
PfamPF021835.4E-11262296IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.5E-23262308IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MELCLSLGDV QAPAEPFGLV SSSSSEKPRD DRVIMAASKT TGFCMSLSIG PSCDSSTSTS  60
PREADQQLDR NDHQNDDDPS RFSAACGSKS DVPVQLDLLP HTPVAPRSSS HGFPWPTPSD  120
QNGGGGGGGG GSSENVNRVE EVAAVSSSPT NSGASSFQMD IGLYSSNYRG SGGKRSHSPE  180
AEGDEGERQS NSRASDEDDI NGINTRKKLR LSKEQSAFLE ESFKEHHTLN PKQKLALAKQ  240
LNLRPRQVEV WFQNRRARTK LKQTEVDCEF LKRCCETLTE ENRRLHKELQ ELRALKTHHH  300
SNPFYMQSPA TTLTMCPSCE RIAATTTTTT TNNNKTTTKA QAEADGFPRF YPFCQPQSHH  360
SSATS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204210TRKKLRL
2254262RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.157740.0fruit
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G004000.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021808868.10.0homeobox-leucine zipper protein HOX11-like isoform X1
SwissprotP466652e-82HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A251Q8X30.0A0A251Q8X3_PRUPE; Uncharacterized protein
STRINGEMJ193550.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-65homeobox from Arabidopsis thaliana