PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G004000.1.p
Common NamePRUPE_ppa007421mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 369aa    MW: 40137.1 Da    PI: 6.7808
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G004000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.7e-18209263256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Prupe.2G004000.1.p 209 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 263
                         778899***********************************************98 PP
2HD-ZIP_I/II126.71e-40209298191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
  Prupe.2G004000.1.p 209 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLHKELQELR-AL 298
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-18183266IPR009057Homeodomain-like
SuperFamilySSF466892.61E-18202266IPR009057Homeodomain-like
PROSITE profilePS5007117.054205265IPR001356Homeobox domain
SMARTSM003893.9E-16207269IPR001356Homeobox domain
CDDcd000867.62E-17209266No hitNo description
PfamPF000462.1E-15209263IPR001356Homeobox domain
PROSITE patternPS000270240263IPR017970Homeobox, conserved site
SMARTSM003405.5E-23265311IPR003106Leucine zipper, homeobox-associated
PfamPF021835.5E-11265299IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MELCLSLGDV QAPAEPFGLV SSSSSEKPRD DRVIMAASKT TGFCMSLSIG PSCDSSTSTS  60
PREADQQLDR NDHQNDDDPS RFSAACGSKS DVPVQLDLLP HTPVAPRSSS HGFPWPTPSD  120
QNVGGGGGGG GGGGSSENVN RVEEVAAVSS SPTNSGASSF QMDIGLYSSN YRGSGGKRSH  180
SPEAEGDEGE RQSNSRASDE DDINGINTRK KLRLSKEQSA FLEESFKEHH TLNPKQKLAL  240
AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEFLKRCCET LTEENRRLHK ELQELRALKT  300
HHHSNPFYMQ SPATTLTMCP SCERIAATTT TTTTNNNKTT TKAQAEADGF PRFYPFCQPQ  360
SHHSSATS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207213TRKKLRL
2257265RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.157740.0fruit
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G004000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007218156.10.0homeobox-leucine zipper protein HOX11
SwissprotP466651e-82HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLM5XJZ30.0M5XJZ3_PRUPE; Uncharacterized protein
STRINGEMJ193550.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1891346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-65homeobox from Arabidopsis thaliana