PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G587100.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 376aa MW: 42136.5 Da PI: 9.1614 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.6 | 1.6e-29 | 5 | 79 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++ + +glkktLvfy+g+apkg +t+W+m+eyrl Prupe.1G587100.4.p 5 GEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 79 689**********************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 37.835 | 1 | 100 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-33 | 3 | 99 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-12 | 9 | 79 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MAAIGEKEWF FYVPRDRKYR NGDRPNRVTT SGYWKATGAD RMIRSENFRS IGLKKTLVFY 60 SGKAPKGIRT SWIMNEYRLP HHETERYQKG EISLCRVYKR AGVEDHPSLP RSLPASKAST 120 SRSSVLVAPS TTISSDNKKQ HNTSTNINNN NINTVHSIME KLQAFNEGQS QQFHQDHEHQ 180 VDQKMSVEPE GSSGNSDVTT VLGLSKRNAY HHNNIGQAHH HPLDQEEGMA AFLHQSNSKQ 240 AAANCFSLIP SSTNSSATLF TAGSSSVSSS NMNAIDDLHR LLTYQHVQQQ AAAASSHHQQ 300 QHVHHHVVQY YDDAHHHPQP NNLFSTFPAV APHVQSAIPP QQLAPNALPT AFSDRLWDWN 360 PISDPNRPDY NNPFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-34 | 2 | 100 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-34 | 2 | 100 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-34 | 2 | 100 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-34 | 2 | 100 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 7e-34 | 2 | 100 | 66 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-34 | 2 | 100 | 66 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G587100.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007225578.2 | 0.0 | NAC domain-containing protein 35 isoform X1 | ||||
TrEMBL | A0A251RKB2 | 0.0 | A0A251RKB2_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A251RKE5 | 0.0 | A0A251RKE5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008218619.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 4e-73 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G587100.4.p |