PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G586000.1.p
Common NamePRUPE_ppa015411mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ZF-HD
Protein Properties Length: 342aa    MW: 37463 Da    PI: 7.6879
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G586000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.42.9e-32106162360
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                         +vrYkeClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+eve e
  Prupe.1G586000.1.p 106 GVRYKECLKNHAAAMGGTATDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKEVEGE 162
                         69**************************9.999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-25107162IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.9E-29107159IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.5E-31108159IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.067109158IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.58E-19259330IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-30262331IPR009057Homeodomain-like
TIGRFAMsTIGR015654.1E-27269325IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MELSSQEAGE IPIPINSSYG GGHGHGHMIH HNHHHHDPAA AATVVPHNHS NLIPSSAVPQ  60
NQNPSNTNGS SMPTSLDHHH HHPHSHPHHE EEEHVNIVPY SCKKVGVRYK ECLKNHAAAM  120
GGTATDGCGE FMPSGEEGTI EALNCSACNC HRNFHRKEVE GEQQPFPSSW DHNFHHTINR  180
VGVGSRKFLL GPGHHKNLIA APQEGLGYHT MPSSRAAAPH QMIMSYNMGM GMGMGMGMGM  240
GALPSESDEQ EEHDGGGAVG RPAAAQLAKK RFRTKFTQEQ KEKMFNFAEK VGWKIQKQED  300
SVVQNFCQEI GVKRRVLKVW MHNNKHNLAK KNPPPPPPPP A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-232703271875ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G586000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4929601e-54FJ492960.1 Rhamnus alaternus microsatellite RaA117 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419157.10.0zinc-finger homeodomain protein 4
TrEMBLM5XPC60.0M5XPC6_PRUPE; Uncharacterized protein
STRINGEMJ273710.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.23e-73homeobox protein 31