PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G583000.1.p

Common Name

PRUPE_ppa002379mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 681aa MW: 78350.4 Da PI: 7.8919

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G583000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.6	2.7e-20	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 ++Y+e+Ak++GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k++ +w+vt + ++HnH Prupe.1G583000.1.p 63 EYYSEFAKQCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPIKTSHERKPQRNRKSSRCGCQAYMRISKTTelgAPEWRVTGFANHHNH 153 69***********9998877356667999*********99999999***************99888889********** PP FAR1 88 ela 90 el Prupe.1G583000.1.p 154 ELL 156 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.7E-17	63	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.4E-20	279	370	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.681	557	590	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.1E-8	561	588	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.1E-5	565	592	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MMSEDAGVML VVYDDPSDQR SLSLDETSST EESPDETRLS LETINDVIPY IGQRFSTHDA 60 AYEYYSEFAK QCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPIKTSH ERKPQRNRKS 120 SRCGCQAYMR ISKTTELGAP EWRVTGFANH HNHELLEANQ VRFLPAYRTI SESDKSRILM 180 FAKTGISVQQ MMRLMELEKC VQPGYLPFTE KDVRNLLQTF RKLDPEDESI DLLRMCRNIK 240 EKDPNFKFEY TLDSDHRLEN IAWSYASSVQ SYEIFGDAVV FDTTHRLTAF DMPLGIWVGI 300 NNYGMPCFFG CVLLREESLR SFSWALKAFL SFMYGKAPQT ILTDQNMFLK EAIGMEMPTT 360 KHALCIWMIV AKFPSWFNAV LGERYNEWKS EFYRIYNLES IEDFELGWRD LVNSFGLHSN 420 RHIVNLYGLR SLWALPFLRS HFFAGMTTMG QSKSINAFIQ RFLSAQTRLA HFVEQVAVAV 480 DFKDQAGEQQ TMQQNLQNIS LKTGAPMESH AASIFTPYAF SKLQEQLVLA AHYASFEMED 540 GFLVRHHTKA EGGRKVYWVP REGIISCSCH HFEFSGILCR HALRVLSTGN CFQIPERYLP 600 VRWRRISIPS AKLLQSAPND HAERIQLLQN IVSTLVTESA KSRERLDIAT EQVSILLSRI 660 REQPVSVQST REISSMHRNI *

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MMSEDAGVML VVYDDPSDQR SLSLDETSST EESPDETRLS LETINDVIPY IGQRFSTHDA  60
AYEYYSEFAK QCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPIKTSH ERKPQRNRKS  120
SRCGCQAYMR ISKTTELGAP EWRVTGFANH HNHELLEANQ VRFLPAYRTI SESDKSRILM  180
FAKTGISVQQ MMRLMELEKC VQPGYLPFTE KDVRNLLQTF RKLDPEDESI DLLRMCRNIK  240
EKDPNFKFEY TLDSDHRLEN IAWSYASSVQ SYEIFGDAVV FDTTHRLTAF DMPLGIWVGI  300
NNYGMPCFFG CVLLREESLR SFSWALKAFL SFMYGKAPQT ILTDQNMFLK EAIGMEMPTT  360
KHALCIWMIV AKFPSWFNAV LGERYNEWKS EFYRIYNLES IEDFELGWRD LVNSFGLHSN  420
RHIVNLYGLR SLWALPFLRS HFFAGMTTMG QSKSINAFIQ RFLSAQTRLA HFVEQVAVAV  480
DFKDQAGEQQ TMQQNLQNIS LKTGAPMESH AASIFTPYAF SKLQEQLVLA AHYASFEMED  540
GFLVRHHTKA EGGRKVYWVP REGIISCSCH HFEFSGILCR HALRVLSTGN CFQIPERYLP  600
VRWRRISIPS AKLLQSAPND HAERIQLLQN IVSTLVTESA KSRERLDIAT EQVSILLSRI  660
REQPVSVQST REISSMHRNI *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G583000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007225159.2	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A251RL31	0.0	A0A251RL31_PRUPE; Uncharacterized protein
STRING	EMJ26358	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Prupe.1G583000.1.p
Entrez Gene	18789236

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]