PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G579400.3.p
Common NamePRUPE_ppa009916mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 273aa    MW: 31145.2 Da    PI: 4.9579
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G579400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.73.6e-121962711898
                         --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         +p +f +++  +  +++t +l     r W v+l    +++ y +++GW  F kan LkegD+++F+l+++++  l v +fr
  Prupe.1G579400.3.p 196 VPASFRKHFTPV--KNQTARLLV-GARLWPVTL--IFHPQNYRFSAGWGAFEKANWLKEGDICIFELMDKKNLALEVNIFR 271
                         566665433433..444666665.5699*****..66777799*************************9999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.827172IPR003340B3 DNA binding domain
SuperFamilySSF1019361.51E-12272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-12272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-17179271IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.096179272IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-17179271IPR015300DNA-binding pseudobarrel domain
CDDcd100176.29E-13182271No hitNo description
SMARTSM010190.0013183272IPR003340B3 DNA binding domain
PfamPF023628.5E-10194271IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MNKHGEHLSD QIHFKLPGGL ESEIKLKRCA GEFWFEKGWP EFSKFCSLDF GSCLVFRYEG  60
KSKFHVLIFD ESGIEIEYPT MPQIEETDEE EDDDMSTKEI LEIEDDDKSV ESLDIETDES  120
LEILVIDEDD DDVKSVESLE SFPLPQEKNR RKPRSSSKPS SSSSSSLRAA VKAANKFVSS  180
HPFFKITLGP SRKAHVPASF RKHFTPVKNQ TARLLVGARL WPVTLIFHPQ NYRFSAGWGA  240
FEKANWLKEG DICIFELMDK KNLALEVNIF RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1315527120141B3 domain-containing transcription factor VRN1
4i1k_B1e-1315527120141B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G579400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007222718.10.0B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A251RJP60.0A0A251RJP6_PRUPE; Uncharacterized protein
STRINGEMJ239170.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-18B3 family protein