PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G579400.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 265aa    MW: 30373.5 Da    PI: 6.4318
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G579400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.83.4e-121882631898
                         --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         +p +f +++  +  +++t +l     r W v+l    +++ y +++GW  F kan LkegD+++F+l+++++  l v +fr
  Prupe.1G579400.2.p 188 VPASFRKHFTPV--KNQTARLLV-GARLWPVTL--IFHPQNYRFSAGWGAFEKANWLKEGDICIFELMDKKNLALEVNIFR 263
                         566665433433..444666665.5699*****..66777799*************************9999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-5344IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-6464IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-17171263IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.096171264IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-17171263IPR015300DNA-binding pseudobarrel domain
CDDcd100173.22E-13174263No hitNo description
SMARTSM010190.0013175264IPR003340B3 DNA binding domain
PfamPF023628.0E-10186263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSAKKIPHFM KTIMNTNARD KRLRVPKTFM NKHGEHLSDQ IHFKLPVFRY EGKSKFHVLI  60
FDESGIEIEY PTMPQIEETD EEEDDDMSTK EILEIEDDDK SVESLDIETD ESLEILVIDE  120
DDDDVKSVES LESFPLPQEK NRRKPRSSSK PSSSSSSSLR AAVKAANKFV SSHPFFKITL  180
GPSRKAHVPA SFRKHFTPVK NQTARLLVGA RLWPVTLIFH PQNYRFSAGW GAFEKANWLK  240
EGDICIFELM DKKNLALEVN IFRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1314726320141B3 domain-containing transcription factor VRN1
4i1k_B1e-1314726320141B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G579400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007222718.11e-164B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A251RKK60.0A0A251RKK6_PRUPE; Uncharacterized protein
STRINGEMJ239171e-164(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-16related to vernalization1 1