PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G579400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 302aa    MW: 34588.4 Da    PI: 6.2552
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G579400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.43e-1410100299
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                          k+ ++  + + +rl++pk+f+++hg+    s ++ ++ + g + e+kl  +++ g+++++kGW eF k   L+ g  +vF+++g+s+f  
  Prupe.1G579400.1.p  10 MKTIMN-TNARDKRLRVPKTFMNKHGEH--LSDQIHFKLPGGLESEIKL--KRCAGEFWFEKGWPEFSKFCSLDFGSCLVFRYEGKSKF-- 93 
                         555544.4555678***********854..8889***************..*********************************99999.. PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                         +v +f++
  Prupe.1G579400.1.p  94 HVLIFDE 100
                         ***9986 PP
2B337.44.5e-122253001898
                         --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         +p +f +++  +  +++t +l     r W v+l    +++ y +++GW  F kan LkegD+++F+l+++++  l v +fr
  Prupe.1G579400.1.p 225 VPASFRKHFTPV--KNQTARLLV-GARLWPVTL--IFHPQNYRFSAGWGAFEKANWLKEGDICIFELMDKKNLALEVNIFR 300
                         566665333433..444666665.5699*****..66777799*************************9999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-213101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-214101IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-13799No hitNo description
PROSITE profilePS5086310.8988101IPR003340B3 DNA binding domain
SMARTSM010192.7E-109101IPR003340B3 DNA binding domain
PfamPF023622.6E-1010100IPR003340B3 DNA binding domain
PROSITE profilePS5086311.096208301IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-17208300IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-17208300IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-12211300No hitNo description
SMARTSM010190.0013212301IPR003340B3 DNA binding domain
PfamPF023621.1E-9223300IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSAKKIPHFM KTIMNTNARD KRLRVPKTFM NKHGEHLSDQ IHFKLPGGLE SEIKLKRCAG  60
EFWFEKGWPE FSKFCSLDFG SCLVFRYEGK SKFHVLIFDE SGIEIEYPTM PQIEETDEEE  120
DDDMSTKEIL EIEDDDKSVE SLDIETDESL EILVIDEDDD DVKSVESLES FPLPQEKNRR  180
KPRSSSKPSS SSSSSLRAAV KAANKFVSSH PFFKITLGPS RKAHVPASFR KHFTPVKNQT  240
ARLLVGARLW PVTLIFHPQN YRFSAGWGAF EKANWLKEGD ICIFELMDKK NLALEVNIFR  300
C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1318430020141B3 domain-containing transcription factor VRN1
4i1k_B1e-1318430020141B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G579400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007222718.10.0B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A251RJP60.0A0A251RJP6_PRUPE; Uncharacterized protein
STRINGEMJ239170.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-21B3 family protein