PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G554100.1.p | ||||||||
Common Name | PRUPE_ppa014627mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 178aa MW: 20380.5 Da PI: 8.2151 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39.3 | 8.4e-13 | 11 | 60 | 3 | 51 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE.-TTSEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif.sstgklyeyss 51 i+ + nr vtf kR++ ++ K E+ +LC++ ++ +++ s+ k+ ++s Prupe.1G554100.1.p 11 ISHEPNRRVTFKKRKASLFRKLTEITTLCGIIACAVVYdTSDSKMDAWPS 60 88999*************************98875555278889999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.591 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-10 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.46E-21 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.19E-18 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-12 | 11 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MGKNKIKHEL ISHEPNRRVT FKKRKASLFR KLTEITTLCG IIACAVVYDT SDSKMDAWPS 60 PQEAFYVLEN FKKLPEQRRG QFMMDQKAFL KKNISRLNGQ LERARFKNQA LDAELLLIEY 120 LEGKHLSDSS RLGSLLALED QLAKKISFIT NRIEFMEVLE PNEVDAEINS DEMGDQG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G554100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007226134.2 | 1e-128 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | M5XZI5 | 1e-128 | M5XZI5_PRUPE; MADS-box protein 29 | ||||
STRING | EMJ27333 | 1e-129 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14464 | 11 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22590.2 | 9e-28 | AGAMOUS-like 87 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G554100.1.p |
Entrez Gene | 18792594 |