PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G548000.2.p
Common NamePRUPE_ppa015966mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 161aa    MW: 18347.7 Da    PI: 9.9786
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G548000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.54.9e-25957149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        k+ien   rqvtf+kRr+g+lKKA+ELSvLCda++ ++ifss+gkl+e 
  Prupe.1G548000.2.p  9 KKIENPVHRQVTFCKRRAGLLKKAKELSVLCDADIGILIFSSHGKLFEL 57
                        68********************************************996 PP
2K-box50.96.6e-1884158983
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                         + e+++   ++e++ Lk+eie Lq+ +R + G + ++++l eLq Le++Le  + ++Rs K+++l+++i+ l++ 
  Prupe.1G548000.2.p  84 AIETQTLDAKKEINLLKQEIEILQKGLRYMFGGGAGTMTLDELQVLEKHLEVWIYHVRSAKMDVLFQEIQLLRNS 158
                         4566777899***********************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.27E-28178IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.24161IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-35160IPR002100Transcription factor, MADS-box
CDDcd002651.84E-38272No hitNo description
PRINTSPR004049.5E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.7E-231056IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.05189160IPR002487Transcription factor, K-box
PfamPF014862.4E-1689159IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MARGKVQMKK IENPVHRQVT FCKRRAGLLK KAKELSVLCD ADIGILIFSS HGKLFELATK  60
GNMQGLIEKY MKMKPPRVSQ ADQAIETQTL DAKKEINLLK QEIEILQKGL RYMFGGGAGT  120
MTLDELQVLE KHLEVWIYHV RSAKMDVLFQ EIQLLRNSEY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-18185184MEF2 CHIMERA
6bz1_B3e-18185184MEF2 CHIMERA
6bz1_C3e-18185184MEF2 CHIMERA
6bz1_D3e-18185184MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During embryo development, expressed in a punctate pattern from the globular stage to the torpedo stage. {ECO:0000269|PubMed:11855641}.
UniprotTISSUE SPECIFICITY: Preferentially expressed in roots (PubMed:7549482). In root meristem, expressed in external cells of columella, lateral root cap and atrichoblasts. In mature root, expressed in the central cylinder (PubMed:11855641). Expressed in leaf vasculature, young floral meristems and nectaries (PubMed:18203871). {ECO:0000269|PubMed:11855641, ECO:0000269|PubMed:18203871, ECO:0000269|PubMed:7549482}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G548000.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640241e-165KP164024.1 Pyrus pyrifolia clone PpAGL12-1 AGL12-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224131.11e-114agamous-like MADS-box protein AGL12
SwissprotQ388415e-67AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A251RKC11e-114A0A251RKC1_PRUPE; Uncharacterized protein
STRINGEMJ253301e-113(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-69AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]