PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G548000.1.p | ||||||||
Common Name | PRUPE_ppa015966mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 205aa MW: 23129.1 Da PI: 8.6565 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.8 | 7.7e-25 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien rqvtf+kRr+g+lKKA+ELSvLCda++ ++ifss+gkl+e Prupe.1G548000.1.p 9 KKIENPVHRQVTFCKRRAGLLKKAKELSVLCDADIGILIFSSHGKLFEL 57 68********************************************996 PP | |||||||
2 | K-box | 60.6 | 6.4e-21 | 84 | 174 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + e+++ ++e++ Lk+eie Lq+ +R + G + ++++l eLq Le++Le + ++Rs K+++l+++i+ l++ e l +nk+L+ k+ Prupe.1G548000.1.p 84 AIETQTLDAKKEINLLKQEIEILQKGLRYMFGGGAGTMTLDELQVLEKHLEVWIYHVRSAKMDVLFQEIQLLRNSEGILTAANKYLQDKIV 174 4566777899******************************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 5.76E-28 | 1 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.24 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.5E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.80E-39 | 2 | 72 | No hit | No description |
PRINTS | PR00404 | 1.6E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-23 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.4E-20 | 89 | 173 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.157 | 89 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MARGKVQMKK IENPVHRQVT FCKRRAGLLK KAKELSVLCD ADIGILIFSS HGKLFELATK 60 GNMQGLIEKY MKMKPPRVSQ ADQAIETQTL DAKKEINLLK QEIEILQKGL RYMFGGGAGT 120 MTLDELQVLE KHLEVWIYHV RSAKMDVLFQ EIQLLRNSEG ILTAANKYLQ DKIVEENIGV 180 TNITPMASDN PYPLTIPDDD IFQI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 1e-17 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
6bz1_B | 1e-17 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
6bz1_C | 1e-17 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
6bz1_D | 1e-17 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During embryo development, expressed in a punctate pattern from the globular stage to the torpedo stage. {ECO:0000269|PubMed:11855641}. | |||||
Uniprot | TISSUE SPECIFICITY: Preferentially expressed in roots (PubMed:7549482). In root meristem, expressed in external cells of columella, lateral root cap and atrichoblasts. In mature root, expressed in the central cylinder (PubMed:11855641). Expressed in leaf vasculature, young floral meristems and nectaries (PubMed:18203871). {ECO:0000269|PubMed:11855641, ECO:0000269|PubMed:18203871, ECO:0000269|PubMed:7549482}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G548000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP164024 | 0.0 | KP164024.1 Pyrus pyrifolia clone PpAGL12-1 AGL12-like MADS-box protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007224131.1 | 1e-150 | agamous-like MADS-box protein AGL12 | ||||
Swissprot | Q38841 | 1e-78 | AGL12_ARATH; Agamous-like MADS-box protein AGL12 | ||||
TrEMBL | M5Y0Z5 | 1e-149 | M5Y0Z5_PRUPE; Uncharacterized protein | ||||
STRING | EMJ25330 | 1e-150 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7566 | 31 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 4e-81 | AGAMOUS-like 12 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G548000.1.p |
Entrez Gene | 18789338 |
Publications ? help Back to Top | |||
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