PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G546100.1.p | ||||||||
Common Name | PRUPE_ppa020605mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 167aa MW: 17890.7 Da PI: 5.7006 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.9 | 7.9e-16 | 18 | 67 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++kGVr++k +g+Wv+eIr+p g + r +lg+f ++e Aa a++ a +l+ Prupe.1G546100.1.p 18 KFKGVRQRK-WGKWVSEIRVP---G-TqDRLWLGSFSSPEAAAVARDVAYYCLRR 67 89******9.**********8...3.35***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.3E-23 | 17 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-25 | 18 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.09E-23 | 18 | 77 | No hit | No description |
SuperFamily | SSF54171 | 3.73E-16 | 18 | 78 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.3E-7 | 18 | 66 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.954 | 18 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-8 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-8 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MSYSSEESSS SPGTGQRKFK GVRQRKWGKW VSEIRVPGTQ DRLWLGSFSS PEAAAVARDV 60 AYYCLRRPST LEGLNFPLVL PSSVHADMSP RSIQKAASDA GMAVDAQLVA NRSPQAGGRQ 120 SNNGSHGVES EVWEDMGESS RTNCGGHMGF GSGCEDLSIS IEDYDL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00158 | DAP | Transfer from AT1G22810 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G546100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007226695.1 | 1e-120 | ethylene-responsive transcription factor ERF020 | ||||
Swissprot | O80542 | 7e-44 | ERF19_ARATH; Ethylene-responsive transcription factor ERF019 | ||||
TrEMBL | M5XPN8 | 1e-119 | M5XPN8_PRUPE; Uncharacterized protein | ||||
STRING | EMJ27894 | 1e-119 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5489 | 30 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22810.1 | 8e-46 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G546100.1.p |
Entrez Gene | 18788687 |
Publications ? help Back to Top | |||
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