PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G539700.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 453aa    MW: 50269.2 Da    PI: 9.7392
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G539700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.73.2e-11243339582
                         -..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS................-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--T CS
                  B3   5 ltpsdvlks.grlvlpkkfaeehggkkeesktltledesg................rsWevkliyrkksgr..yvltkGWkeFvkangLke 76 
                         l   dv  + +r+++p k ++e  ++++ +++l+l++ ++                ++++++l+ +  +g+  y l +GW+e +kan+Lk+
  Prupe.1G539700.1.p 243 LFDTDVADNnQRFSIPMKQVKEDFLSEKDQTELKLRNGHNqkhlvgipvkvldpslKEYTLRLKKWTMGGSivYNLVSGWREIAKANKLKT 333
                         5555665553899**********777777788888888888888888888888888*******88888888779999************** PP

                         T-EEEE CS
                  B3  77 gDfvvF 82 
                         gD++ +
  Prupe.1G539700.1.p 334 GDTLQL 339
                         **9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037548.6E-20219327IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.101.5E-12236350IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-12238347IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-5239357IPR003340B3 DNA binding domain
CDDcd100175.94E-12239347No hitNo description
PROSITE profilePS508639.855240357IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MKGDFQFGSD SNSLNLLSEV SVVVKDWDED DVEKAMAMAV RSCCCNPLHG YGFDGCLIPQ  60
KAMVKQNKRV FSSSSSSSSS LDMLAEVATQ QLMELGNGNG LTTKWVFDEK AVLAEFISFC  120
AKKKRSEFKT FHFSDINVPK KKRSSMKRTQ RRFLPHASHD SVLSISCMNM KRKRLSAHSG  180
SDHGHEDNNN EALVQKKQKL VHVKSTADVK SPSSLKREMP QDMKNRISSI GGGDLKLVIE  240
KELFDTDVAD NNQRFSIPMK QVKEDFLSEK DQTELKLRNG HNQKHLVGIP VKVLDPSLKE  300
YTLRLKKWTM GGSIVYNLVS GWREIAKANK LKTGDTLQLW SFRDDSNKLG FALVKVSTTT  360
MEVDQSGPGA RTSSQNGTNS HTLSTAKVNS LKTSDDTVQC WSIKCKSQFR FALVKVSKTK  420
VEVQQCRHGA STCSSCQNGQ TGSSVSCISH DC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122142KKRSEFKTFHFSDINVPKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G539700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A251RHG30.0A0A251RHG3_PRUPE; Uncharacterized protein
STRINGEMJ230820.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.18e-13B3 family protein