PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G531700.1.p | ||||||||
Common Name | PRUPE_ppa010714mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 26532.3 Da PI: 4.818 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.9 | 1.3e-23 | 16 | 59 | 8 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr g++KKA ELSvLC+ evaviifs t+kl++yss Prupe.1G531700.1.p 16 ARQVTFSKRRRGLFKKAAELSVLCESEVAVIIFSATDKLFDYSS 59 69****************************************96 PP | |||||||
2 | K-box | 48 | 5.3e-17 | 86 | 171 | 14 | 99 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++++ kL ke+e+ r +R+++GedL+ L++ eL +Leq +e sl ++ ++K+el++++i l kk el e+n++Lr+k++ Prupe.1G531700.1.p 86 LQLENENHIKLSKELEEKSRRLRQMKGEDLQGLNMDELLKLEQLVEASLGRVIETKEELIMSEIMALEKKGAELVEANNQLRQKMA 171 3445667789999**9999****************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.3E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.366 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-22 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.54E-33 | 3 | 77 | No hit | No description |
SuperFamily | SSF55455 | 7.59E-27 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-21 | 16 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-22 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-22 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.139 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 9.2E-15 | 90 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MMREKIKIKK IDYLPARQVT FSKRRRGLFK KAAELSVLCE SEVAVIIFSA TDKLFDYSSS 60 STEDVIERYK AHTNDLEKSN KQFLELQLEN ENHIKLSKEL EEKSRRLRQM KGEDLQGLNM 120 DELLKLEQLV EASLGRVIET KEELIMSEIM ALEKKGAELV EANNQLRQKM AMLSGGNTGP 180 AFVEPETLIT NVGGGGEEDG MSSESAIIAT STSCNSAHSL SLEDDCSDVT LSLKLGLP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-17 | 1 | 92 | 1 | 93 | MEF2C |
5f28_B | 5e-17 | 1 | 92 | 1 | 93 | MEF2C |
5f28_C | 5e-17 | 1 | 92 | 1 | 93 | MEF2C |
5f28_D | 5e-17 | 1 | 92 | 1 | 93 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G531700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ863252 | 0.0 | DQ863252.1 Prunus persica dam6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007227562.1 | 1e-172 | MADS-box protein JOINTLESS | ||||
Swissprot | Q9FUY6 | 3e-69 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | M5XT89 | 1e-171 | M5XT89_PRUPE; Uncharacterized protein | ||||
STRING | EMJ28761 | 1e-172 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15110 | 4 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 1e-64 | AGAMOUS-like 24 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G531700.1.p |
Entrez Gene | 18789329 |
Publications ? help Back to Top | |||
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